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Cluster: Rep_1069_CGC6

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1069_c_10 Rep_1069_c_10_15 16603 17802 + 2.A.23.2.1
TC Rep_1069_c_10 Rep_1069_c_10_16 17931 18608 - 2.A.79.1.6
TC Rep_1069_c_10 Rep_1069_c_10_17 18610 19386 - 2.A.79.1.5
pfam Rep_1069_c_10 Rep_1069_c_10_18 19709 21175 + CW_binding_2 | CW_binding_2 | CW_binding_2
TF Rep_1069_c_10 Rep_1069_c_10_19 21426 21965 + HTH_3
TC Rep_1069_c_10 Rep_1069_c_10_20 21988 23031 + 3.A.1.11.8
TC Rep_1069_c_10 Rep_1069_c_10_21 23034 23900 + 3.A.1.11.8
TC Rep_1069_c_10 Rep_1069_c_10_22 23900 24706 + 3.A.1.11.8
TC Rep_1069_c_10 Rep_1069_c_10_23 24725 25810 + 3.A.1.11.7
CAZyme Rep_1069_c_10 Rep_1069_c_10_24 25936 27414 - GH77
CAZyme Rep_1069_c_10 Rep_1069_c_10_25 27505 29448 - GH13_39
CAZyme Rep_1069_c_10 Rep_1069_c_10_26 29906 31771 + GH13_9
pfam Rep_1069_c_10 Rep_1069_c_10_27 31796 32968 + NTP_transferase | Hexapep_GlmU
pfam Rep_1069_c_10 Rep_1069_c_10_28 32980 34086 + NTP_transferase | Hexapep_GlmU
CAZyme Rep_1069_c_10 Rep_1069_c_10_29 34177 35601 + GT5
CAZyme Rep_1069_c_10 Rep_1069_c_10_30 35781 38171 + GT35
Gene ID: Rep_1069_c_10_15
Type: TC
Location: 16603 - 17802 (+)
Gene ID: Rep_1069_c_10_16
Type: TC
Location: 17931 - 18608 (-)
Gene ID: Rep_1069_c_10_17
Type: TC
Location: 18610 - 19386 (-)
Gene ID: Rep_1069_c_10_18
Type: pfam
Location: 19709 - 21175 (+)
Gene ID: Rep_1069_c_10_19
Type: TF
Location: 21426 - 21965 (+)
Gene ID: Rep_1069_c_10_20
Type: TC
Location: 21988 - 23031 (+)
Gene ID: Rep_1069_c_10_21
Type: TC
Location: 23034 - 23900 (+)
Gene ID: Rep_1069_c_10_22
Type: TC
Location: 23900 - 24706 (+)
Gene ID: Rep_1069_c_10_23
Type: TC
Location: 24725 - 25810 (+)
Gene ID: Rep_1069_c_10_24
Type: CAZyme
Location: 25936 - 27414 (-)
Gene ID: Rep_1069_c_10_25
Type: CAZyme
Location: 27505 - 29448 (-)
Gene ID: Rep_1069_c_10_26
Type: CAZyme
Location: 29906 - 31771 (+)
Gene ID: Rep_1069_c_10_27
Type: pfam
Location: 31796 - 32968 (+)
Gene ID: Rep_1069_c_10_28
Type: pfam
Location: 32980 - 34086 (+)
Gene ID: Rep_1069_c_10_29
Type: CAZyme
Location: 34177 - 35601 (+)
Gene ID: Rep_1069_c_10_30
Type: CAZyme
Location: 35781 - 38171 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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