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Cluster: Rep_1065_CGC7

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1065_c_135 Rep_1065_c_135_29 26551 27372 + 8.A.3.2.4
TC Rep_1065_c_135 Rep_1065_c_135_30 27385 28128 + 8.A.3.2.1
pfam Rep_1065_c_135 Rep_1065_c_135_31 28204 28971 + CpsB_CapC
CAZyme Rep_1065_c_135 Rep_1065_c_135_32 29075 30337 + CBM50
TC Rep_1065_c_135 Rep_1065_c_135_33 30340 31146 + 3.A.1.104.1
NULL(UNKNOWN) Rep_1065_c_135 Rep_1065_c_135_34 31162 32979 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1065_c_135 Rep_1065_c_135_35 33111 33746 + 9.B.27.2.5
pfam Rep_1065_c_135 Rep_1065_c_135_36 33833 35200 - Mur_ligase_C | Mur_ligase_M
TC Rep_1065_c_135 Rep_1065_c_135_37 35349 36344 + 9.B.157.1.1
pfam Rep_1065_c_135 Rep_1065_c_135_38 36346 36555 + DUF2969
TC Rep_1065_c_135 Rep_1065_c_135_39 36566 37759 + 2.A.103.1.6
pfam Rep_1065_c_135 Rep_1065_c_135_40 37823 38614 + F420_oxidored | P5CR_dimer
pfam Rep_1065_c_135 Rep_1065_c_135_41 38847 39662 + S6PP | S6PP | Hydrolase_3
CAZyme Rep_1065_c_135 Rep_1065_c_135_42 39757 40923 + CE9
Gene ID: Rep_1065_c_135_29
Type: TC
Location: 26551 - 27372 (+)
Gene ID: Rep_1065_c_135_30
Type: TC
Location: 27385 - 28128 (+)
Gene ID: Rep_1065_c_135_31
Type: pfam
Location: 28204 - 28971 (+)
Gene ID: Rep_1065_c_135_32
Type: CAZyme
Location: 29075 - 30337 (+)
Gene ID: Rep_1065_c_135_33
Type: TC
Location: 30340 - 31146 (+)
Gene ID: Rep_1065_c_135_34
Type:
Location: 31162 - 32979 (+)
Gene ID: Rep_1065_c_135_35
Type: TC
Location: 33111 - 33746 (+)
Gene ID: Rep_1065_c_135_36
Type: pfam
Location: 33833 - 35200 (-)
Gene ID: Rep_1065_c_135_37
Type: TC
Location: 35349 - 36344 (+)
Gene ID: Rep_1065_c_135_38
Type: pfam
Location: 36346 - 36555 (+)
Gene ID: Rep_1065_c_135_39
Type: TC
Location: 36566 - 37759 (+)
Gene ID: Rep_1065_c_135_40
Type: pfam
Location: 37823 - 38614 (+)
Gene ID: Rep_1065_c_135_41
Type: pfam
Location: 38847 - 39662 (+)
Gene ID: Rep_1065_c_135_42
Type: CAZyme
Location: 39757 - 40923 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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