Cluster: Rep_1065_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1065
- CGC Family ID: CGCFAM_00102
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1065_c_47 | Rep_1065_c_47_2 | 219 | 2564 | + | 3.A.5.10.1 |
| TC | Rep_1065_c_47 | Rep_1065_c_47_3 | 2592 | 3821 | + | 3.A.5.10.1 |
| pfam | Rep_1065_c_47 | Rep_1065_c_47_4 | 3838 | 5442 | + | Asp1 |
| TC | Rep_1065_c_47 | Rep_1065_c_47_5 | 5432 | 7024 | + | 3.A.5.10.1 |
| pfam | Rep_1065_c_47 | Rep_1065_c_47_6 | 7031 | 7819 | + | Sec-ASP3 |
| CAZyme | Rep_1065_c_47 | Rep_1065_c_47_7 | 7841 | 9292 | + | GT4 |
Gene ID: Rep_1065_c_47_2
Type: TC
Location: 219 - 2564 (+)
Type: TC
Location: 219 - 2564 (+)
Gene ID: Rep_1065_c_47_3
Type: TC
Location: 2592 - 3821 (+)
Type: TC
Location: 2592 - 3821 (+)
Gene ID: Rep_1065_c_47_4
Type: pfam
Location: 3838 - 5442 (+)
Type: pfam
Location: 3838 - 5442 (+)
Gene ID: Rep_1065_c_47_5
Type: TC
Location: 5432 - 7024 (+)
Type: TC
Location: 5432 - 7024 (+)
Gene ID: Rep_1065_c_47_6
Type: pfam
Location: 7031 - 7819 (+)
Type: pfam
Location: 7031 - 7819 (+)
Gene ID: Rep_1065_c_47_7
Type: CAZyme
Location: 7841 - 9292 (+)
Type: CAZyme
Location: 7841 - 9292 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Weissella
Species
Weissella viridescens
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.