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Cluster: Rep_1065_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1065_c_5 Rep_1065_c_5_3 1438 2577 + 3.A.1.104.1
TC Rep_1065_c_5 Rep_1065_c_5_4 2580 3386 + 3.A.1.104.1
pfam Rep_1065_c_5 Rep_1065_c_5_5 3441 4553 + Glyphos_transf
TC Rep_1065_c_5 Rep_1065_c_5_6 4732 5361 + 9.B.18.1.2
NULL(UNKNOWN) Rep_1065_c_5 Rep_1065_c_5_7 5385 5690 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1065_c_5 Rep_1065_c_5_8 5711 6484 + GT111
TF Rep_1065_c_5 Rep_1065_c_5_9 6689 7711 + 0043758
pfam Rep_1065_c_5 Rep_1065_c_5_10 7729 8313 + GrpE
TC Rep_1065_c_5 Rep_1065_c_5_11 8379 10193 + 1.A.33.1.4
Gene ID: Rep_1065_c_5_3
Type: TC
Location: 1438 - 2577 (+)
Gene ID: Rep_1065_c_5_4
Type: TC
Location: 2580 - 3386 (+)
Gene ID: Rep_1065_c_5_5
Type: pfam
Location: 3441 - 4553 (+)
Gene ID: Rep_1065_c_5_6
Type: TC
Location: 4732 - 5361 (+)
Gene ID: Rep_1065_c_5_7
Type:
Location: 5385 - 5690 (+)
Gene ID: Rep_1065_c_5_8
Type: CAZyme
Location: 5711 - 6484 (+)
Gene ID: Rep_1065_c_5_9
Type: TF
Location: 6689 - 7711 (+)
Gene ID: Rep_1065_c_5_10
Type: pfam
Location: 7729 - 8313 (+)
Gene ID: Rep_1065_c_5_11
Type: TC
Location: 8379 - 10193 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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