Cluster: Rep_1054_CGC9
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1054
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1054_c_99 | Rep_1054_c_99_1 | 3 | 464 | - | 9.B.141.1.2 |
| TC | Rep_1054_c_99 | Rep_1054_c_99_2 | 461 | 1561 | - | 9.B.141.1.3 |
| pfam | Rep_1054_c_99 | Rep_1054_c_99_3 | 1675 | 2202 | - | Acetyltransf_1 |
| NULL(UNKNOWN) | Rep_1054_c_99 | Rep_1054_c_99_4 | 2467 | 3168 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| CAZyme | Rep_1054_c_99 | Rep_1054_c_99_5 | 3361 | 5667 | + | GH65 |
| CAZyme | Rep_1054_c_99 | Rep_1054_c_99_6 | 6010 | 7773 | + | GH65 |
Gene ID: Rep_1054_c_99_1
Type: TC
Location: 3 - 464 (-)
Type: TC
Location: 3 - 464 (-)
Gene ID: Rep_1054_c_99_2
Type: TC
Location: 461 - 1561 (-)
Type: TC
Location: 461 - 1561 (-)
Gene ID: Rep_1054_c_99_3
Type: pfam
Location: 1675 - 2202 (-)
Type: pfam
Location: 1675 - 2202 (-)
Gene ID: Rep_1054_c_99_4
Type:
Location: 2467 - 3168 (+)
Type:
Location: 2467 - 3168 (+)
Gene ID: Rep_1054_c_99_5
Type: CAZyme
Location: 3361 - 5667 (+)
Type: CAZyme
Location: 3361 - 5667 (+)
Gene ID: Rep_1054_c_99_6
Type: CAZyme
Location: 6010 - 7773 (+)
Type: CAZyme
Location: 6010 - 7773 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Loigolactobacillus
Species
Loigolactobacillus coryniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.