Cluster: Rep_1054_CGC3
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1054
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1054_c_18 | Rep_1054_c_18_3 | 1128 | 1745 | + | 2.A.87.3.1 |
| pfam | Rep_1054_c_18 | Rep_1054_c_18_4 | 1732 | 2712 | + | polyprenyl_synt |
| pfam | Rep_1054_c_18 | Rep_1054_c_18_5 | 2808 | 3917 | - | Ldh_2 |
| CAZyme | Rep_1054_c_18 | Rep_1054_c_18_6 | 4096 | 5601 | - | GT4 |
| CAZyme | Rep_1054_c_18 | Rep_1054_c_18_7 | 5598 | 7145 | - | GT4 |
Gene ID: Rep_1054_c_18_3
Type: TC
Location: 1128 - 1745 (+)
Type: TC
Location: 1128 - 1745 (+)
Gene ID: Rep_1054_c_18_4
Type: pfam
Location: 1732 - 2712 (+)
Type: pfam
Location: 1732 - 2712 (+)
Gene ID: Rep_1054_c_18_5
Type: pfam
Location: 2808 - 3917 (-)
Type: pfam
Location: 2808 - 3917 (-)
Gene ID: Rep_1054_c_18_6
Type: CAZyme
Location: 4096 - 5601 (-)
Type: CAZyme
Location: 4096 - 5601 (-)
Gene ID: Rep_1054_c_18_7
Type: CAZyme
Location: 5598 - 7145 (-)
Type: CAZyme
Location: 5598 - 7145 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Loigolactobacillus
Species
Loigolactobacillus coryniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.