Cluster: Rep_1054_CGC14
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1054
- CGC Family ID: CGCFAM_00209
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1054_c_184 | Rep_1054_c_184_2 | 201 | 689 | - | 4.A.1.1.11 |
| TF | Rep_1054_c_184 | Rep_1054_c_184_3 | 703 | 1551 | - | HTH_6 |
| TC | Rep_1054_c_184 | Rep_1054_c_184_4 | 1621 | 3078 | - | 4.A.1.2.7 |
| STP | Rep_1054_c_184 | Rep_1054_c_184_5 | 3100 | 3990 | - | SIS |
| CAZyme | Rep_1054_c_184 | Rep_1054_c_184_6 | 3990 | 5060 | - | GH170 |
Gene ID: Rep_1054_c_184_2
Type: TC
Location: 201 - 689 (-)
Type: TC
Location: 201 - 689 (-)
Gene ID: Rep_1054_c_184_3
Type: TF
Location: 703 - 1551 (-)
Type: TF
Location: 703 - 1551 (-)
Gene ID: Rep_1054_c_184_4
Type: TC
Location: 1621 - 3078 (-)
Type: TC
Location: 1621 - 3078 (-)
Gene ID: Rep_1054_c_184_5
Type: STP
Location: 3100 - 3990 (-)
Type: STP
Location: 3100 - 3990 (-)
Gene ID: Rep_1054_c_184_6
Type: CAZyme
Location: 3990 - 5060 (-)
Type: CAZyme
Location: 3990 - 5060 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Loigolactobacillus
Species
Loigolactobacillus coryniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.