Cluster: Rep_1054_CGC11
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1054
- CGC Family ID: CGCFAM_00456
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1054_c_143 | Rep_1054_c_143_1 | 3 | 371 | - | GT2 |
| TC | Rep_1054_c_143 | Rep_1054_c_143_2 | 368 | 1024 | - | 9.B.18.1.3 |
| pfam | Rep_1054_c_143 | Rep_1054_c_143_3 | 1038 | 1973 | - | 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd |
| pfam | Rep_1054_c_143 | Rep_1054_c_143_4 | 1998 | 2768 | - | CpsB_CapC |
| TC | Rep_1054_c_143 | Rep_1054_c_143_5 | 2765 | 3520 | - | 8.A.3.2.1 |
| TC | Rep_1054_c_143 | Rep_1054_c_143_6 | 3520 | 4332 | - | 8.A.3.2.4 |
Gene ID: Rep_1054_c_143_1
Type: CAZyme
Location: 3 - 371 (-)
Type: CAZyme
Location: 3 - 371 (-)
Gene ID: Rep_1054_c_143_2
Type: TC
Location: 368 - 1024 (-)
Type: TC
Location: 368 - 1024 (-)
Gene ID: Rep_1054_c_143_3
Type: pfam
Location: 1038 - 1973 (-)
Type: pfam
Location: 1038 - 1973 (-)
Gene ID: Rep_1054_c_143_4
Type: pfam
Location: 1998 - 2768 (-)
Type: pfam
Location: 1998 - 2768 (-)
Gene ID: Rep_1054_c_143_5
Type: TC
Location: 2765 - 3520 (-)
Type: TC
Location: 2765 - 3520 (-)
Gene ID: Rep_1054_c_143_6
Type: TC
Location: 3520 - 4332 (-)
Type: TC
Location: 3520 - 4332 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Loigolactobacillus
Species
Loigolactobacillus coryniformis
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.