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Cluster: Rep_1054_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1054_c_3 Rep_1054_c_3_10 12311 13015 + 3.A.1.26.10
CAZyme Rep_1054_c_3 Rep_1054_c_3_11 13053 15305 - GH65
CAZyme Rep_1054_c_3 Rep_1054_c_3_12 15635 17332 - GH13_31
TC Rep_1054_c_3 Rep_1054_c_3_13 17450 18553 - 3.A.1.1.20
NULL(UNKNOWN) Rep_1054_c_3 Rep_1054_c_3_14 18710 19339 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1054_c_3 Rep_1054_c_3_15 19363 20175 - 3.A.1.1.45
TC Rep_1054_c_3 Rep_1054_c_3_16 20175 21035 - 3.A.1.1.45
TC Rep_1054_c_3 Rep_1054_c_3_17 21168 22460 - 3.A.1.1.45
Gene ID: Rep_1054_c_3_10
Type: TC
Location: 12311 - 13015 (+)
Gene ID: Rep_1054_c_3_11
Type: CAZyme
Location: 13053 - 15305 (-)
Gene ID: Rep_1054_c_3_12
Type: CAZyme
Location: 15635 - 17332 (-)
Gene ID: Rep_1054_c_3_13
Type: TC
Location: 17450 - 18553 (-)
Gene ID: Rep_1054_c_3_14
Type:
Location: 18710 - 19339 (-)
Gene ID: Rep_1054_c_3_15
Type: TC
Location: 19363 - 20175 (-)
Gene ID: Rep_1054_c_3_16
Type: TC
Location: 20175 - 21035 (-)
Gene ID: Rep_1054_c_3_17
Type: TC
Location: 21168 - 22460 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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