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Cluster: Rep_102_CGC10

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_102_c_25 Rep_102_c_25_18 17762 20731 - 1.B.42.1.8
pfam Rep_102_c_25 Rep_102_c_25_19 21028 21768 - SIMPL
STP Rep_102_c_25 Rep_102_c_25_20 21823 22770 - Pyr_redox_2
TC Rep_102_c_25 Rep_102_c_25_21 23106 23687 - 3.D.6.1.2
TC Rep_102_c_25 Rep_102_c_25_22 23753 24343 - 3.D.6.1.2
TC Rep_102_c_25 Rep_102_c_25_23 24353 25501 - 3.D.6.1.3
TC Rep_102_c_25 Rep_102_c_25_24 25498 26487 - 3.D.6.1.2
TC Rep_102_c_25 Rep_102_c_25_25 26540 27892 - 3.D.6.1.2
TC Rep_102_c_25 Rep_102_c_25_26 27902 28837 - 3.D.6.1.2
pfam Rep_102_c_25 Rep_102_c_25_27 28854 29276 - RseC_MucC
STP Rep_102_c_25 Rep_102_c_25_28 29405 30430 - Aminotran_1_2
CAZyme Rep_102_c_25 Rep_102_c_25_29 30471 31787 - GH3
Gene ID: Rep_102_c_25_18
Type: TC
Location: 17762 - 20731 (-)
Gene ID: Rep_102_c_25_19
Type: pfam
Location: 21028 - 21768 (-)
Gene ID: Rep_102_c_25_20
Type: STP
Location: 21823 - 22770 (-)
Gene ID: Rep_102_c_25_21
Type: TC
Location: 23106 - 23687 (-)
Gene ID: Rep_102_c_25_22
Type: TC
Location: 23753 - 24343 (-)
Gene ID: Rep_102_c_25_23
Type: TC
Location: 24353 - 25501 (-)
Gene ID: Rep_102_c_25_24
Type: TC
Location: 25498 - 26487 (-)
Gene ID: Rep_102_c_25_25
Type: TC
Location: 26540 - 27892 (-)
Gene ID: Rep_102_c_25_26
Type: TC
Location: 27902 - 28837 (-)
Gene ID: Rep_102_c_25_27
Type: pfam
Location: 28854 - 29276 (-)
Gene ID: Rep_102_c_25_28
Type: STP
Location: 29405 - 30430 (-)
Gene ID: Rep_102_c_25_29
Type: CAZyme
Location: 30471 - 31787 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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