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Cluster: Rep_1027_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1027_c_50 Rep_1027_c_50_3 2803 3681 + 8.A.3.2.4
TC Rep_1027_c_50 Rep_1027_c_50_4 3700 4479 + 8.A.3.2.1
pfam Rep_1027_c_50 Rep_1027_c_50_5 4479 5249 + CpsB_CapC
TC Rep_1027_c_50 Rep_1027_c_50_6 5286 5936 + 9.B.18.1.2
CAZyme Rep_1027_c_50 Rep_1027_c_50_7 5981 6739 + GT111
CAZyme Rep_1027_c_50 Rep_1027_c_50_8 6756 7775 + GT2
CAZyme Rep_1027_c_50 Rep_1027_c_50_9 7811 8923 + GT4
TC Rep_1027_c_50 Rep_1027_c_50_10 8939 10249 + 9.B.67.2.2
CAZyme Rep_1027_c_50 Rep_1027_c_50_11 10271 11311 + GT2
STP Rep_1027_c_50 Rep_1027_c_50_12 11331 12443 + Pyr_redox
TC Rep_1027_c_50 Rep_1027_c_50_13 12449 13882 + 2.A.66.2.16
Gene ID: Rep_1027_c_50_3
Type: TC
Location: 2803 - 3681 (+)
Gene ID: Rep_1027_c_50_4
Type: TC
Location: 3700 - 4479 (+)
Gene ID: Rep_1027_c_50_5
Type: pfam
Location: 4479 - 5249 (+)
Gene ID: Rep_1027_c_50_6
Type: TC
Location: 5286 - 5936 (+)
Gene ID: Rep_1027_c_50_7
Type: CAZyme
Location: 5981 - 6739 (+)
Gene ID: Rep_1027_c_50_8
Type: CAZyme
Location: 6756 - 7775 (+)
Gene ID: Rep_1027_c_50_9
Type: CAZyme
Location: 7811 - 8923 (+)
Gene ID: Rep_1027_c_50_10
Type: TC
Location: 8939 - 10249 (+)
Gene ID: Rep_1027_c_50_11
Type: CAZyme
Location: 10271 - 11311 (+)
Gene ID: Rep_1027_c_50_12
Type: STP
Location: 11331 - 12443 (+)
Gene ID: Rep_1027_c_50_13
Type: TC
Location: 12449 - 13882 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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