dbCAN Logo

Cluster: Rep_1027_CGC29

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1027_c_48 Rep_1027_c_48_3 1970 2965 + 3.A.1.7.5
TC Rep_1027_c_48 Rep_1027_c_48_4 2991 3854 + 3.A.1.7.5
TC Rep_1027_c_48 Rep_1027_c_48_5 3864 4658 + 3.A.1.7.5
TC Rep_1027_c_48 Rep_1027_c_48_6 4660 5415 + 3.A.1.7.5
pfam Rep_1027_c_48 Rep_1027_c_48_7 5432 6109 + PhoU | PhoU
TC Rep_1027_c_48 Rep_1027_c_48_8 6244 7434 + 3.A.5.2.1
pfam Rep_1027_c_48 Rep_1027_c_48_9 7438 8940 + Asp1
TC Rep_1027_c_48 Rep_1027_c_48_10 8940 10487 + 3.A.5.10.1
pfam Rep_1027_c_48 Rep_1027_c_48_11 10489 11367 + Sec-ASP3
TC Rep_1027_c_48 Rep_1027_c_48_12 11373 13739 + 3.A.5.10.1
CAZyme Rep_1027_c_48 Rep_1027_c_48_13 13754 15277 + GT4
Gene ID: Rep_1027_c_48_3
Type: TC
Location: 1970 - 2965 (+)
Gene ID: Rep_1027_c_48_4
Type: TC
Location: 2991 - 3854 (+)
Gene ID: Rep_1027_c_48_5
Type: TC
Location: 3864 - 4658 (+)
Gene ID: Rep_1027_c_48_6
Type: TC
Location: 4660 - 5415 (+)
Gene ID: Rep_1027_c_48_7
Type: pfam
Location: 5432 - 6109 (+)
Gene ID: Rep_1027_c_48_8
Type: TC
Location: 6244 - 7434 (+)
Gene ID: Rep_1027_c_48_9
Type: pfam
Location: 7438 - 8940 (+)
Gene ID: Rep_1027_c_48_10
Type: TC
Location: 8940 - 10487 (+)
Gene ID: Rep_1027_c_48_11
Type: pfam
Location: 10489 - 11367 (+)
Gene ID: Rep_1027_c_48_12
Type: TC
Location: 11373 - 13739 (+)
Gene ID: Rep_1027_c_48_13
Type: CAZyme
Location: 13754 - 15277 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

← Back to Cluster List