Cluster: Rep_1027_CGC27
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1027
- CGC Family ID: CGCFAM_00403
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1027_c_46 | Rep_1027_c_46_5 | 3442 | 4890 | - | GH1 |
| TF | Rep_1027_c_46 | Rep_1027_c_46_6 | 4976 | 5680 | - | GntR |
| TC | Rep_1027_c_46 | Rep_1027_c_46_7 | 6010 | 6345 | + | 4.A.3.2.4 |
| TC | Rep_1027_c_46 | Rep_1027_c_46_8 | 6379 | 6747 | + | 4.A.3.2.2 |
| NULL(UNKNOWN) | Rep_1027_c_46 | Rep_1027_c_46_9 | 6856 | 7368 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1027_c_46 | Rep_1027_c_46_10 | 7577 | 8587 | + | 4.A.3.2.3 |
| TC | Rep_1027_c_46 | Rep_1027_c_46_11 | 8532 | 8927 | + | 4.A.3.2.9 |
| pfam | Rep_1027_c_46 | Rep_1027_c_46_12 | 9015 | 9425 | - | DUF3284 |
| CAZyme | Rep_1027_c_46 | Rep_1027_c_46_13 | 9517 | 10998 | - | GH1 |
| TF | Rep_1027_c_46 | Rep_1027_c_46_14 | 11009 | 11731 | - | GntR |
| NULL(UNKNOWN) | Rep_1027_c_46 | Rep_1027_c_46_15 | 11858 | 12106 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1027_c_46 | Rep_1027_c_46_16 | 12149 | 13561 | - | 4.A.3.2.2 |
| CAZyme | Rep_1027_c_46 | Rep_1027_c_46_17 | 13561 | 14943 | - | GH1 |
Gene ID: Rep_1027_c_46_5
Type: CAZyme
Location: 3442 - 4890 (-)
Type: CAZyme
Location: 3442 - 4890 (-)
Gene ID: Rep_1027_c_46_6
Type: TF
Location: 4976 - 5680 (-)
Type: TF
Location: 4976 - 5680 (-)
Gene ID: Rep_1027_c_46_7
Type: TC
Location: 6010 - 6345 (+)
Type: TC
Location: 6010 - 6345 (+)
Gene ID: Rep_1027_c_46_8
Type: TC
Location: 6379 - 6747 (+)
Type: TC
Location: 6379 - 6747 (+)
Gene ID: Rep_1027_c_46_9
Type:
Location: 6856 - 7368 (+)
Type:
Location: 6856 - 7368 (+)
Gene ID: Rep_1027_c_46_10
Type: TC
Location: 7577 - 8587 (+)
Type: TC
Location: 7577 - 8587 (+)
Gene ID: Rep_1027_c_46_11
Type: TC
Location: 8532 - 8927 (+)
Type: TC
Location: 8532 - 8927 (+)
Gene ID: Rep_1027_c_46_12
Type: pfam
Location: 9015 - 9425 (-)
Type: pfam
Location: 9015 - 9425 (-)
Gene ID: Rep_1027_c_46_13
Type: CAZyme
Location: 9517 - 10998 (-)
Type: CAZyme
Location: 9517 - 10998 (-)
Gene ID: Rep_1027_c_46_14
Type: TF
Location: 11009 - 11731 (-)
Type: TF
Location: 11009 - 11731 (-)
Gene ID: Rep_1027_c_46_15
Type:
Location: 11858 - 12106 (-)
Type:
Location: 11858 - 12106 (-)
Gene ID: Rep_1027_c_46_16
Type: TC
Location: 12149 - 13561 (-)
Type: TC
Location: 12149 - 13561 (-)
Gene ID: Rep_1027_c_46_17
Type: CAZyme
Location: 13561 - 14943 (-)
Type: CAZyme
Location: 13561 - 14943 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus sp902491705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.