Cluster: Rep_1027_CGC21
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1027
- CGC Family ID: CGCFAM_01385
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1027_c_24 | Rep_1027_c_24_13 | 11681 | 13009 | - | 4.A.3.2.4 |
| TC | Rep_1027_c_24 | Rep_1027_c_24_14 | 13006 | 14244 | - | 3.A.18.1.1 |
| CAZyme | Rep_1027_c_24 | Rep_1027_c_24_15 | 14244 | 14951 | - | GH25 |
| TC | Rep_1027_c_24 | Rep_1027_c_24_16 | 15061 | 16365 | + | 2.A.3.8.12 |
| pfam | Rep_1027_c_24 | Rep_1027_c_24_17 | 16386 | 17609 | - | MFS_3 | MFS_1 |
| STP | Rep_1027_c_24 | Rep_1027_c_24_18 | 17885 | 18454 | - | Pribosyltran |
| TC | Rep_1027_c_24 | Rep_1027_c_24_19 | 18558 | 19928 | - | 9.A.40.2.1 |
| STP | Rep_1027_c_24 | Rep_1027_c_24_20 | 20017 | 20673 | - | Nitroreductase |
| NULL(UNKNOWN) | Rep_1027_c_24 | Rep_1027_c_24_21 | 20711 | 20977 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1027_c_24 | Rep_1027_c_24_22 | 21104 | 21589 | - | 4.A.1.1.12 |
| NULL(UNKNOWN) | Rep_1027_c_24 | Rep_1027_c_24_23 | 21610 | 22107 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_1027_c_24 | Rep_1027_c_24_24 | 22091 | 22903 | - | HTH_6 |
| TC | Rep_1027_c_24 | Rep_1027_c_24_25 | 22965 | 24845 | - | 4.A.1.1.8 |
Gene ID: Rep_1027_c_24_13
Type: TC
Location: 11681 - 13009 (-)
Type: TC
Location: 11681 - 13009 (-)
Gene ID: Rep_1027_c_24_14
Type: TC
Location: 13006 - 14244 (-)
Type: TC
Location: 13006 - 14244 (-)
Gene ID: Rep_1027_c_24_15
Type: CAZyme
Location: 14244 - 14951 (-)
Type: CAZyme
Location: 14244 - 14951 (-)
Gene ID: Rep_1027_c_24_16
Type: TC
Location: 15061 - 16365 (+)
Type: TC
Location: 15061 - 16365 (+)
Gene ID: Rep_1027_c_24_17
Type: pfam
Location: 16386 - 17609 (-)
Type: pfam
Location: 16386 - 17609 (-)
Gene ID: Rep_1027_c_24_18
Type: STP
Location: 17885 - 18454 (-)
Type: STP
Location: 17885 - 18454 (-)
Gene ID: Rep_1027_c_24_19
Type: TC
Location: 18558 - 19928 (-)
Type: TC
Location: 18558 - 19928 (-)
Gene ID: Rep_1027_c_24_20
Type: STP
Location: 20017 - 20673 (-)
Type: STP
Location: 20017 - 20673 (-)
Gene ID: Rep_1027_c_24_21
Type:
Location: 20711 - 20977 (-)
Type:
Location: 20711 - 20977 (-)
Gene ID: Rep_1027_c_24_22
Type: TC
Location: 21104 - 21589 (-)
Type: TC
Location: 21104 - 21589 (-)
Gene ID: Rep_1027_c_24_23
Type:
Location: 21610 - 22107 (-)
Type:
Location: 21610 - 22107 (-)
Gene ID: Rep_1027_c_24_24
Type: TF
Location: 22091 - 22903 (-)
Type: TF
Location: 22091 - 22903 (-)
Gene ID: Rep_1027_c_24_25
Type: TC
Location: 22965 - 24845 (-)
Type: TC
Location: 22965 - 24845 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus sp902491705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.