Cluster: Rep_1027_CGC16
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1027
- CGC Family ID: CGCFAM_00410
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1027_c_14 | Rep_1027_c_14_22 | 17230 | 18423 | + | 2.A.1.36.3 |
| TF | Rep_1027_c_14 | Rep_1027_c_14_23 | 18550 | 19719 | + | HTH_AraC | HTH_AraC |
| CAZyme | Rep_1027_c_14 | Rep_1027_c_14_24 | 19758 | 22178 | - | GH2 |
| TC | Rep_1027_c_14 | Rep_1027_c_14_25 | 22194 | 23558 | - | 2.A.2.3.3 |
| CAZyme | Rep_1027_c_14 | Rep_1027_c_14_26 | 23561 | 24961 | - | GH43_24 |
| CAZyme | Rep_1027_c_14 | Rep_1027_c_14_27 | 25148 | 26176 | - | GH43_24 |
| CAZyme | Rep_1027_c_14 | Rep_1027_c_14_28 | 26192 | 28594 | - | GH3 |
Gene ID: Rep_1027_c_14_22
Type: TC
Location: 17230 - 18423 (+)
Type: TC
Location: 17230 - 18423 (+)
Gene ID: Rep_1027_c_14_23
Type: TF
Location: 18550 - 19719 (+)
Type: TF
Location: 18550 - 19719 (+)
Gene ID: Rep_1027_c_14_24
Type: CAZyme
Location: 19758 - 22178 (-)
Type: CAZyme
Location: 19758 - 22178 (-)
Gene ID: Rep_1027_c_14_25
Type: TC
Location: 22194 - 23558 (-)
Type: TC
Location: 22194 - 23558 (-)
Gene ID: Rep_1027_c_14_26
Type: CAZyme
Location: 23561 - 24961 (-)
Type: CAZyme
Location: 23561 - 24961 (-)
Gene ID: Rep_1027_c_14_27
Type: CAZyme
Location: 25148 - 26176 (-)
Type: CAZyme
Location: 25148 - 26176 (-)
Gene ID: Rep_1027_c_14_28
Type: CAZyme
Location: 26192 - 28594 (-)
Type: CAZyme
Location: 26192 - 28594 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus sp902491705
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.