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Cluster: Rep_1027_CGC15

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1027_c_13 Rep_1027_c_13_35 30325 31572 + 2.A.1.2.20
pfam Rep_1027_c_13 Rep_1027_c_13_36 31621 32124 - Macro
TC Rep_1027_c_13 Rep_1027_c_13_37 32256 33113 - 3.A.1.1.27
TC Rep_1027_c_13 Rep_1027_c_13_38 33116 34474 - 3.A.1.1.27
TC Rep_1027_c_13 Rep_1027_c_13_39 34553 35782 - 3.A.1.1.27
TC Rep_1027_c_13 Rep_1027_c_13_40 35868 36974 - 3.A.1.1.20
pfam Rep_1027_c_13 Rep_1027_c_13_41 37000 37665 - Hydrolase | HAD_2
CAZyme Rep_1027_c_13 Rep_1027_c_13_42 37658 39922 - GH65
CAZyme Rep_1027_c_13 Rep_1027_c_13_43 40097 41818 - CBM34 | GH13_20
Gene ID: Rep_1027_c_13_35
Type: TC
Location: 30325 - 31572 (+)
Gene ID: Rep_1027_c_13_36
Type: pfam
Location: 31621 - 32124 (-)
Gene ID: Rep_1027_c_13_37
Type: TC
Location: 32256 - 33113 (-)
Gene ID: Rep_1027_c_13_38
Type: TC
Location: 33116 - 34474 (-)
Gene ID: Rep_1027_c_13_39
Type: TC
Location: 34553 - 35782 (-)
Gene ID: Rep_1027_c_13_40
Type: TC
Location: 35868 - 36974 (-)
Gene ID: Rep_1027_c_13_41
Type: pfam
Location: 37000 - 37665 (-)
Gene ID: Rep_1027_c_13_42
Type: CAZyme
Location: 37658 - 39922 (-)
Gene ID: Rep_1027_c_13_43
Type: CAZyme
Location: 40097 - 41818 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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