Cluster: Rep_1020_CGC6
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1020
- CGC Family ID: CGCFAM_03336
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1020_c_49 | Rep_1020_c_49_8 | 6107 | 7192 | + | 9.B.141.1.3 |
| TC | Rep_1020_c_49 | Rep_1020_c_49_9 | 7204 | 7953 | + | 9.B.141.1.2 |
| CAZyme | Rep_1020_c_49 | Rep_1020_c_49_10 | 8036 | 10990 | - | GH31_18 |
| CAZyme | Rep_1020_c_49 | Rep_1020_c_49_11 | 11078 | 12238 | + | CE9 |
| TC | Rep_1020_c_49 | Rep_1020_c_49_12 | 12331 | 12729 | + | 4.A.6.1.18 |
| TC | Rep_1020_c_49 | Rep_1020_c_49_13 | 13038 | 14615 | + | 3.A.1.106.15 |
Gene ID: Rep_1020_c_49_8
Type: TC
Location: 6107 - 7192 (+)
Type: TC
Location: 6107 - 7192 (+)
Gene ID: Rep_1020_c_49_9
Type: TC
Location: 7204 - 7953 (+)
Type: TC
Location: 7204 - 7953 (+)
Gene ID: Rep_1020_c_49_10
Type: CAZyme
Location: 8036 - 10990 (-)
Type: CAZyme
Location: 8036 - 10990 (-)
Gene ID: Rep_1020_c_49_11
Type: CAZyme
Location: 11078 - 12238 (+)
Type: CAZyme
Location: 11078 - 12238 (+)
Gene ID: Rep_1020_c_49_12
Type: TC
Location: 12331 - 12729 (+)
Type: TC
Location: 12331 - 12729 (+)
Gene ID: Rep_1020_c_49_13
Type: TC
Location: 13038 - 14615 (+)
Type: TC
Location: 13038 - 14615 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus iners
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.