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Cluster: Rep_1020_CGC5

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1020_c_17 Rep_1020_c_17_47 50966 51574 + 3.A.1.31.1
pfam Rep_1020_c_17 Rep_1020_c_17_48 51574 52263 + CbiQ
TC Rep_1020_c_17 Rep_1020_c_17_49 52257 53636 + 3.A.1.31.2
CAZyme Rep_1020_c_17 Rep_1020_c_17_50 53692 55311 + GH13_31
pfam Rep_1020_c_17 Rep_1020_c_17_51 55350 56567 - Amidase_5
pfam Rep_1020_c_17 Rep_1020_c_17_52 56961 57956 + ABC_sub_bind
TC Rep_1020_c_17 Rep_1020_c_17_53 57956 58855 + 3.A.1.34.1
TC Rep_1020_c_17 Rep_1020_c_17_54 58848 59609 + 3.A.1.34.1
TC Rep_1020_c_17 Rep_1020_c_17_55 59719 61167 + 2.A.1.3.50
Gene ID: Rep_1020_c_17_47
Type: TC
Location: 50966 - 51574 (+)
Gene ID: Rep_1020_c_17_48
Type: pfam
Location: 51574 - 52263 (+)
Gene ID: Rep_1020_c_17_49
Type: TC
Location: 52257 - 53636 (+)
Gene ID: Rep_1020_c_17_50
Type: CAZyme
Location: 53692 - 55311 (+)
Gene ID: Rep_1020_c_17_51
Type: pfam
Location: 55350 - 56567 (-)
Gene ID: Rep_1020_c_17_52
Type: pfam
Location: 56961 - 57956 (+)
Gene ID: Rep_1020_c_17_53
Type: TC
Location: 57956 - 58855 (+)
Gene ID: Rep_1020_c_17_54
Type: TC
Location: 58848 - 59609 (+)
Gene ID: Rep_1020_c_17_55
Type: TC
Location: 59719 - 61167 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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