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Cluster: Rep_1020_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1020_c_13 Rep_1020_c_13_73 66056 67435 + 3.D.10.1.4
TC Rep_1020_c_13 Rep_1020_c_13_74 67514 68383 - 3.A.1.1.27
TC Rep_1020_c_13 Rep_1020_c_13_75 68389 69738 - 3.A.1.1.27
STP Rep_1020_c_13 Rep_1020_c_13_76 69801 71015 - SBP_bac_1
TC Rep_1020_c_13 Rep_1020_c_13_77 71118 72221 - 3.A.1.1.20
pfam Rep_1020_c_13 Rep_1020_c_13_78 72241 72903 - Hydrolase | HAD_2
CAZyme Rep_1020_c_13 Rep_1020_c_13_79 72888 75161 - GH65
CAZyme Rep_1020_c_13 Rep_1020_c_13_80 75269 77017 - CBM34 | GH13_20
CAZyme Rep_1020_c_13 Rep_1020_c_13_81 77032 78693 - GH13_31
Gene ID: Rep_1020_c_13_73
Type: TC
Location: 66056 - 67435 (+)
Gene ID: Rep_1020_c_13_74
Type: TC
Location: 67514 - 68383 (-)
Gene ID: Rep_1020_c_13_75
Type: TC
Location: 68389 - 69738 (-)
Gene ID: Rep_1020_c_13_76
Type: STP
Location: 69801 - 71015 (-)
Gene ID: Rep_1020_c_13_77
Type: TC
Location: 71118 - 72221 (-)
Gene ID: Rep_1020_c_13_78
Type: pfam
Location: 72241 - 72903 (-)
Gene ID: Rep_1020_c_13_79
Type: CAZyme
Location: 72888 - 75161 (-)
Gene ID: Rep_1020_c_13_80
Type: CAZyme
Location: 75269 - 77017 (-)
Gene ID: Rep_1020_c_13_81
Type: CAZyme
Location: 77032 - 78693 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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