Cluster: Rep_1020_CGC3
🧬 Cluster Details
- Gene Count: 15
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1020
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1020_c_13 | Rep_1020_c_13_1 | 287 | 1039 | - | 3.A.1.7.5 |
| TC | Rep_1020_c_13 | Rep_1020_c_13_2 | 1051 | 1818 | - | 3.A.1.7.5 |
| TC | Rep_1020_c_13 | Rep_1020_c_13_3 | 1818 | 2711 | - | 3.A.1.7.1 |
| TC | Rep_1020_c_13 | Rep_1020_c_13_4 | 2714 | 3628 | - | 3.A.1.7.2 |
| STP | Rep_1020_c_13 | Rep_1020_c_13_5 | 3631 | 4500 | - | SBP_bac_1 |
| TF | Rep_1020_c_13 | Rep_1020_c_13_6 | 4647 | 5363 | + | Trans_reg_C |
| TC | Rep_1020_c_13 | Rep_1020_c_13_7 | 5366 | 6043 | - | 3.A.1.122.4 |
| pfam | Rep_1020_c_13 | Rep_1020_c_13_8 | 6066 | 7121 | - | FtsX |
| STP | Rep_1020_c_13 | Rep_1020_c_13_9 | 7125 | 7649 | - | TetR_N |
| TC | Rep_1020_c_13 | Rep_1020_c_13_10 | 7790 | 8275 | - | 4.A.1.1.11 |
| NULL(UNKNOWN) | Rep_1020_c_13 | Rep_1020_c_13_11 | 8280 | 8789 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_1020_c_13 | Rep_1020_c_13_12 | 8767 | 9573 | - | HTH_6 |
| TC | Rep_1020_c_13 | Rep_1020_c_13_13 | 9905 | 11527 | - | 4.A.1.1.8 |
| CAZyme | Rep_1020_c_13 | Rep_1020_c_13_14 | 11611 | 12597 | - | GH4 |
| CAZyme | Rep_1020_c_13 | Rep_1020_c_13_15 | 12626 | 12949 | - | GH4 |
Gene ID: Rep_1020_c_13_1
Type: TC
Location: 287 - 1039 (-)
Type: TC
Location: 287 - 1039 (-)
Gene ID: Rep_1020_c_13_2
Type: TC
Location: 1051 - 1818 (-)
Type: TC
Location: 1051 - 1818 (-)
Gene ID: Rep_1020_c_13_3
Type: TC
Location: 1818 - 2711 (-)
Type: TC
Location: 1818 - 2711 (-)
Gene ID: Rep_1020_c_13_4
Type: TC
Location: 2714 - 3628 (-)
Type: TC
Location: 2714 - 3628 (-)
Gene ID: Rep_1020_c_13_5
Type: STP
Location: 3631 - 4500 (-)
Type: STP
Location: 3631 - 4500 (-)
Gene ID: Rep_1020_c_13_6
Type: TF
Location: 4647 - 5363 (+)
Type: TF
Location: 4647 - 5363 (+)
Gene ID: Rep_1020_c_13_7
Type: TC
Location: 5366 - 6043 (-)
Type: TC
Location: 5366 - 6043 (-)
Gene ID: Rep_1020_c_13_8
Type: pfam
Location: 6066 - 7121 (-)
Type: pfam
Location: 6066 - 7121 (-)
Gene ID: Rep_1020_c_13_9
Type: STP
Location: 7125 - 7649 (-)
Type: STP
Location: 7125 - 7649 (-)
Gene ID: Rep_1020_c_13_10
Type: TC
Location: 7790 - 8275 (-)
Type: TC
Location: 7790 - 8275 (-)
Gene ID: Rep_1020_c_13_11
Type:
Location: 8280 - 8789 (-)
Type:
Location: 8280 - 8789 (-)
Gene ID: Rep_1020_c_13_12
Type: TF
Location: 8767 - 9573 (-)
Type: TF
Location: 8767 - 9573 (-)
Gene ID: Rep_1020_c_13_13
Type: TC
Location: 9905 - 11527 (-)
Type: TC
Location: 9905 - 11527 (-)
Gene ID: Rep_1020_c_13_14
Type: CAZyme
Location: 11611 - 12597 (-)
Type: CAZyme
Location: 11611 - 12597 (-)
Gene ID: Rep_1020_c_13_15
Type: CAZyme
Location: 12626 - 12949 (-)
Type: CAZyme
Location: 12626 - 12949 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus iners
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.