Cluster: Rep_1020_CGC1
🧬 Cluster Details
- Gene Count: 13
- CAZyme Count: 4
- Substrate:
- Genome ID: Rep_1020
- CGC Family ID: CGCFAM_01025
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1020_c_4 | Rep_1020_c_4_12 | 14458 | 15069 | - | GH73 |
| pfam | Rep_1020_c_4 | Rep_1020_c_4_13 | 15072 | 15683 | - | ECF_trnsprt |
| pfam | Rep_1020_c_4 | Rep_1020_c_4_14 | 15899 | 17041 | - | IMPDH |
| TC | Rep_1020_c_4 | Rep_1020_c_4_15 | 17189 | 19852 | - | 3.A.3.2.28 |
| pfam | Rep_1020_c_4 | Rep_1020_c_4_16 | 20038 | 20874 | - | NAD_synthase |
| pfam | Rep_1020_c_4 | Rep_1020_c_4_17 | 20877 | 22355 | - | NAPRTase | NAPRTase_N | NAPRTase_C |
| CAZyme | Rep_1020_c_4 | Rep_1020_c_4_18 | 22406 | 23104 | - | GT32 |
| CAZyme | Rep_1020_c_4 | Rep_1020_c_4_19 | 23167 | 24255 | - | GT4 |
| CAZyme | Rep_1020_c_4 | Rep_1020_c_4_20 | 24291 | 25016 | - | GT26 |
| TC | Rep_1020_c_4 | Rep_1020_c_4_21 | 25020 | 26447 | - | 2.A.66.2.16 |
| pfam | Rep_1020_c_4 | Rep_1020_c_4_22 | 26462 | 27595 | - | Glyphos_transf |
| pfam | Rep_1020_c_4 | Rep_1020_c_4_23 | 27732 | 28121 | + | CTP_transf_like |
| TC | Rep_1020_c_4 | Rep_1020_c_4_24 | 28350 | 29603 | + | 2.A.1.47.2 |
Gene ID: Rep_1020_c_4_12
Type: CAZyme
Location: 14458 - 15069 (-)
Type: CAZyme
Location: 14458 - 15069 (-)
Gene ID: Rep_1020_c_4_13
Type: pfam
Location: 15072 - 15683 (-)
Type: pfam
Location: 15072 - 15683 (-)
Gene ID: Rep_1020_c_4_14
Type: pfam
Location: 15899 - 17041 (-)
Type: pfam
Location: 15899 - 17041 (-)
Gene ID: Rep_1020_c_4_15
Type: TC
Location: 17189 - 19852 (-)
Type: TC
Location: 17189 - 19852 (-)
Gene ID: Rep_1020_c_4_16
Type: pfam
Location: 20038 - 20874 (-)
Type: pfam
Location: 20038 - 20874 (-)
Gene ID: Rep_1020_c_4_17
Type: pfam
Location: 20877 - 22355 (-)
Type: pfam
Location: 20877 - 22355 (-)
Gene ID: Rep_1020_c_4_18
Type: CAZyme
Location: 22406 - 23104 (-)
Type: CAZyme
Location: 22406 - 23104 (-)
Gene ID: Rep_1020_c_4_19
Type: CAZyme
Location: 23167 - 24255 (-)
Type: CAZyme
Location: 23167 - 24255 (-)
Gene ID: Rep_1020_c_4_20
Type: CAZyme
Location: 24291 - 25016 (-)
Type: CAZyme
Location: 24291 - 25016 (-)
Gene ID: Rep_1020_c_4_21
Type: TC
Location: 25020 - 26447 (-)
Type: TC
Location: 25020 - 26447 (-)
Gene ID: Rep_1020_c_4_22
Type: pfam
Location: 26462 - 27595 (-)
Type: pfam
Location: 26462 - 27595 (-)
Gene ID: Rep_1020_c_4_23
Type: pfam
Location: 27732 - 28121 (+)
Type: pfam
Location: 27732 - 28121 (+)
Gene ID: Rep_1020_c_4_24
Type: TC
Location: 28350 - 29603 (+)
Type: TC
Location: 28350 - 29603 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus iners
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.