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Cluster: Rep_1019_CGC16

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1019_c_31 Rep_1019_c_31_8 6262 7845 + 3.A.1.3.20
TC Rep_1019_c_31 Rep_1019_c_31_9 7850 8611 + 3.A.1.3.20
NULL(UNKNOWN) Rep_1019_c_31 Rep_1019_c_31_10 8660 9118 - NULL(UNKNOWN)
[View Structural Homologs]
STP Rep_1019_c_31 Rep_1019_c_31_11 9260 12082 - EAL | GGDEF | GGDEF
CAZyme Rep_1019_c_31 Rep_1019_c_31_12 12464 13600 - CBM50
pfam Rep_1019_c_31 Rep_1019_c_31_13 13829 14740 - HNH | HNH_4
NULL(UNKNOWN) Rep_1019_c_31 Rep_1019_c_31_14 14898 15032 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1019_c_31 Rep_1019_c_31_15 15625 16770 + 2.A.45.2.6
Gene ID: Rep_1019_c_31_8
Type: TC
Location: 6262 - 7845 (+)
Gene ID: Rep_1019_c_31_9
Type: TC
Location: 7850 - 8611 (+)
Gene ID: Rep_1019_c_31_10
Type:
Location: 8660 - 9118 (-)
Gene ID: Rep_1019_c_31_11
Type: STP
Location: 9260 - 12082 (-)
Gene ID: Rep_1019_c_31_12
Type: CAZyme
Location: 12464 - 13600 (-)
Gene ID: Rep_1019_c_31_13
Type: pfam
Location: 13829 - 14740 (-)
Gene ID: Rep_1019_c_31_14
Type:
Location: 14898 - 15032 (-)
Gene ID: Rep_1019_c_31_15
Type: TC
Location: 15625 - 16770 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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