Cluster: Rep_1019_CGC15
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1019
- CGC Family ID: CGCFAM_09237
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1019_c_28 | Rep_1019_c_28_14 | 9912 | 10412 | - | 4.A.1.1.11 |
| NULL(UNKNOWN) | Rep_1019_c_28 | Rep_1019_c_28_15 | 10920 | 11312 | - |
NULL(UNKNOWN)
[View Structural Homologs] |
| TF | Rep_1019_c_28 | Rep_1019_c_28_16 | 11404 | 12330 | + | HTH_11 |
| TC | Rep_1019_c_28 | Rep_1019_c_28_17 | 12560 | 13234 | - | 3.A.1.122.4 |
| pfam | Rep_1019_c_28 | Rep_1019_c_28_18 | 13236 | 14294 | - | FtsX |
| STP | Rep_1019_c_28 | Rep_1019_c_28_19 | 14338 | 14841 | - | TetR_N |
| CAZyme | Rep_1019_c_28 | Rep_1019_c_28_20 | 15141 | 16544 | - | AA4 |
Gene ID: Rep_1019_c_28_14
Type: TC
Location: 9912 - 10412 (-)
Type: TC
Location: 9912 - 10412 (-)
Gene ID: Rep_1019_c_28_15
Type:
Location: 10920 - 11312 (-)
Type:
Location: 10920 - 11312 (-)
Gene ID: Rep_1019_c_28_16
Type: TF
Location: 11404 - 12330 (+)
Type: TF
Location: 11404 - 12330 (+)
Gene ID: Rep_1019_c_28_17
Type: TC
Location: 12560 - 13234 (-)
Type: TC
Location: 12560 - 13234 (-)
Gene ID: Rep_1019_c_28_18
Type: pfam
Location: 13236 - 14294 (-)
Type: pfam
Location: 13236 - 14294 (-)
Gene ID: Rep_1019_c_28_19
Type: STP
Location: 14338 - 14841 (-)
Type: STP
Location: 14338 - 14841 (-)
Gene ID: Rep_1019_c_28_20
Type: CAZyme
Location: 15141 - 16544 (-)
Type: CAZyme
Location: 15141 - 16544 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Bacillota
Class
Bacilli
Order
Lactobacillales
Family
Lactobacillaceae
Genus
Lactobacillus
Species
Lactobacillus sp027681045
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.