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Cluster: Rep_1019_CGC14

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1019_c_27 Rep_1019_c_27_4 2204 3661 - GH32
TC Rep_1019_c_27 Rep_1019_c_27_5 3945 5891 + 4.A.1.2.12
pfam Rep_1019_c_27 Rep_1019_c_27_6 6077 7156 + PFK
pfam Rep_1019_c_27 Rep_1019_c_27_7 7238 8959 - PGM_PMM_IV | PGM_PMM_I | PGM_PMM_II | PGM_PMM_III
CAZyme Rep_1019_c_27 Rep_1019_c_27_8 8975 10777 - GH13_39
CAZyme Rep_1019_c_27 Rep_1019_c_27_9 10787 13237 - GT35
CAZyme Rep_1019_c_27 Rep_1019_c_27_10 13262 14692 - GT5
pfam Rep_1019_c_27 Rep_1019_c_27_11 14708 15850 - NTP_transferase | Hexapep_GlmU
pfam Rep_1019_c_27 Rep_1019_c_27_12 15837 16985 - NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme Rep_1019_c_27 Rep_1019_c_27_13 17033 18931 - CBM48 | GH13_9
TC Rep_1019_c_27 Rep_1019_c_27_14 19444 19878 - 9.B.143.3.6
Gene ID: Rep_1019_c_27_4
Type: CAZyme
Location: 2204 - 3661 (-)
Gene ID: Rep_1019_c_27_5
Type: TC
Location: 3945 - 5891 (+)
Gene ID: Rep_1019_c_27_6
Type: pfam
Location: 6077 - 7156 (+)
Gene ID: Rep_1019_c_27_7
Type: pfam
Location: 7238 - 8959 (-)
Gene ID: Rep_1019_c_27_8
Type: CAZyme
Location: 8975 - 10777 (-)
Gene ID: Rep_1019_c_27_9
Type: CAZyme
Location: 10787 - 13237 (-)
Gene ID: Rep_1019_c_27_10
Type: CAZyme
Location: 13262 - 14692 (-)
Gene ID: Rep_1019_c_27_11
Type: pfam
Location: 14708 - 15850 (-)
Gene ID: Rep_1019_c_27_12
Type: pfam
Location: 15837 - 16985 (-)
Gene ID: Rep_1019_c_27_13
Type: CAZyme
Location: 17033 - 18931 (-)
Gene ID: Rep_1019_c_27_14
Type: TC
Location: 19444 - 19878 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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