Cluster: Rep_1015_CGC2
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 3
- Substrate:
- Genome ID: Rep_1015
- CGC Family ID: CGCFAM_05137
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1015_c_4 | Rep_1015_c_4_17 | 18542 | 19492 | + | 8.A.21.2.1 |
| TC | Rep_1015_c_4 | Rep_1015_c_4_18 | 19527 | 21458 | + | 8.A.21.2.4 |
| CAZyme | Rep_1015_c_4 | Rep_1015_c_4_19 | 21523 | 23706 | - | GH13_11 |
| CAZyme | Rep_1015_c_4 | Rep_1015_c_4_20 | 23763 | 25946 | - | GH13_9 |
| CAZyme | Rep_1015_c_4 | Rep_1015_c_4_21 | 25965 | 28166 | - | GH77 |
| pfam | Rep_1015_c_4 | Rep_1015_c_4_22 | 28774 | 29784 | + | Gp_dh_N | Gp_dh_C |
| TC | Rep_1015_c_4 | Rep_1015_c_4_23 | 29964 | 30869 | - | 9.B.1.1.6 |
Gene ID: Rep_1015_c_4_17
Type: TC
Location: 18542 - 19492 (+)
Type: TC
Location: 18542 - 19492 (+)
Gene ID: Rep_1015_c_4_18
Type: TC
Location: 19527 - 21458 (+)
Type: TC
Location: 19527 - 21458 (+)
Gene ID: Rep_1015_c_4_19
Type: CAZyme
Location: 21523 - 23706 (-)
Type: CAZyme
Location: 21523 - 23706 (-)
Gene ID: Rep_1015_c_4_20
Type: CAZyme
Location: 23763 - 25946 (-)
Type: CAZyme
Location: 23763 - 25946 (-)
Gene ID: Rep_1015_c_4_21
Type: CAZyme
Location: 25965 - 28166 (-)
Type: CAZyme
Location: 25965 - 28166 (-)
Gene ID: Rep_1015_c_4_22
Type: pfam
Location: 28774 - 29784 (+)
Type: pfam
Location: 28774 - 29784 (+)
Gene ID: Rep_1015_c_4_23
Type: TC
Location: 29964 - 30869 (-)
Type: TC
Location: 29964 - 30869 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinatimonas
Species
Succinatimonas sp905203285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.