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Cluster: Rep_1015_CGC18

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1015_c_71 Rep_1015_c_71_4 2699 2962 - 3.A.6.1.1
NULL(UNKNOWN) Rep_1015_c_71 Rep_1015_c_71_5 3205 3816 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1015_c_71 Rep_1015_c_71_6 3913 4860 + FliMN_C
TC Rep_1015_c_71 Rep_1015_c_71_7 4866 5534 + 3.A.6.1.1
STP Rep_1015_c_71 Rep_1015_c_71_8 5550 5888 + STAS
pfam Rep_1015_c_71 Rep_1015_c_71_9 5904 6332 + HATPase_c_2
CAZyme Rep_1015_c_71 Rep_1015_c_71_10 6385 6954 + GH23
Gene ID: Rep_1015_c_71_4
Type: TC
Location: 2699 - 2962 (-)
Gene ID: Rep_1015_c_71_5
Type:
Location: 3205 - 3816 (+)
Gene ID: Rep_1015_c_71_6
Type: pfam
Location: 3913 - 4860 (+)
Gene ID: Rep_1015_c_71_7
Type: TC
Location: 4866 - 5534 (+)
Gene ID: Rep_1015_c_71_8
Type: STP
Location: 5550 - 5888 (+)
Gene ID: Rep_1015_c_71_9
Type: pfam
Location: 5904 - 6332 (+)
Gene ID: Rep_1015_c_71_10
Type: CAZyme
Location: 6385 - 6954 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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