Cluster: Rep_1015_CGC16
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1015
- CGC Family ID: CGCFAM_00056
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1015_c_55 | Rep_1015_c_55_7 | 5538 | 6419 | + | 2.A.7.17.2 |
| TF | Rep_1015_c_55 | Rep_1015_c_55_8 | 7351 | 8028 | + | Trans_reg_C |
| STP | Rep_1015_c_55 | Rep_1015_c_55_9 | 8013 | 9083 | + | HATPase_c | HisKA |
| CAZyme | Rep_1015_c_55 | Rep_1015_c_55_10 | 9307 | 10860 | + | GT83 |
| CAZyme | Rep_1015_c_55 | Rep_1015_c_55_11 | 10905 | 11660 | + | GT2 |
| TC | Rep_1015_c_55 | Rep_1015_c_55_12 | 11653 | 12288 | + | 2.A.123.4.1 |
Gene ID: Rep_1015_c_55_7
Type: TC
Location: 5538 - 6419 (+)
Type: TC
Location: 5538 - 6419 (+)
Gene ID: Rep_1015_c_55_8
Type: TF
Location: 7351 - 8028 (+)
Type: TF
Location: 7351 - 8028 (+)
Gene ID: Rep_1015_c_55_9
Type: STP
Location: 8013 - 9083 (+)
Type: STP
Location: 8013 - 9083 (+)
Gene ID: Rep_1015_c_55_10
Type: CAZyme
Location: 9307 - 10860 (+)
Type: CAZyme
Location: 9307 - 10860 (+)
Gene ID: Rep_1015_c_55_11
Type: CAZyme
Location: 10905 - 11660 (+)
Type: CAZyme
Location: 10905 - 11660 (+)
Gene ID: Rep_1015_c_55_12
Type: TC
Location: 11653 - 12288 (+)
Type: TC
Location: 11653 - 12288 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinatimonas
Species
Succinatimonas sp905203285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.