Cluster: Rep_1015_CGC11
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1015
- CGC Family ID: CGCFAM_01390
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1015_c_20 | Rep_1015_c_20_1 | 105 | 974 | - | 9.B.104.1.1 |
| pfam | Rep_1015_c_20 | Rep_1015_c_20_2 | 974 | 1936 | - | 3Beta_HSD | Epimerase | Polysacc_synt_2 | RmlD_sub_bind | GDP_Man_Dehyd |
| CAZyme | Rep_1015_c_20 | Rep_1015_c_20_3 | 2071 | 3096 | + | GT9 |
| CAZyme | Rep_1015_c_20 | Rep_1015_c_20_4 | 3098 | 4384 | + | GT30 |
Gene ID: Rep_1015_c_20_1
Type: TC
Location: 105 - 974 (-)
Type: TC
Location: 105 - 974 (-)
Gene ID: Rep_1015_c_20_2
Type: pfam
Location: 974 - 1936 (-)
Type: pfam
Location: 974 - 1936 (-)
Gene ID: Rep_1015_c_20_3
Type: CAZyme
Location: 2071 - 3096 (+)
Type: CAZyme
Location: 2071 - 3096 (+)
Gene ID: Rep_1015_c_20_4
Type: CAZyme
Location: 3098 - 4384 (+)
Type: CAZyme
Location: 3098 - 4384 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinatimonas
Species
Succinatimonas sp905203285
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.