Cluster: Rep_1013_CGC13
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1013
- CGC Family ID: CGCFAM_01156
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1013_c_46 | Rep_1013_c_46_1 | 13 | 2034 | - | GH23 |
| TC | Rep_1013_c_46 | Rep_1013_c_46_2 | 2272 | 3645 | - | 2.A.22.5.3 |
| TC | Rep_1013_c_46 | Rep_1013_c_46_3 | 3661 | 5031 | - | 2.A.22.5.3 |
| TC | Rep_1013_c_46 | Rep_1013_c_46_4 | 5042 | 6415 | - | 2.A.22.5.3 |
| pfam | Rep_1013_c_46 | Rep_1013_c_46_5 | 6499 | 8778 | - | KH_1 | S1 | RNase_PH | RNase_PH | RNase_PH_C | RNase_PH_C | PNPase |
| pfam | Rep_1013_c_46 | Rep_1013_c_46_6 | 8874 | 9143 | - | Ribosomal_S15 |
| TC | Rep_1013_c_46 | Rep_1013_c_46_7 | 10329 | 12026 | + | 2.A.53.3.11 |
Gene ID: Rep_1013_c_46_1
Type: CAZyme
Location: 13 - 2034 (-)
Type: CAZyme
Location: 13 - 2034 (-)
Gene ID: Rep_1013_c_46_2
Type: TC
Location: 2272 - 3645 (-)
Type: TC
Location: 2272 - 3645 (-)
Gene ID: Rep_1013_c_46_3
Type: TC
Location: 3661 - 5031 (-)
Type: TC
Location: 3661 - 5031 (-)
Gene ID: Rep_1013_c_46_4
Type: TC
Location: 5042 - 6415 (-)
Type: TC
Location: 5042 - 6415 (-)
Gene ID: Rep_1013_c_46_5
Type: pfam
Location: 6499 - 8778 (-)
Type: pfam
Location: 6499 - 8778 (-)
Gene ID: Rep_1013_c_46_6
Type: pfam
Location: 8874 - 9143 (-)
Type: pfam
Location: 8874 - 9143 (-)
Gene ID: Rep_1013_c_46_7
Type: TC
Location: 10329 - 12026 (+)
Type: TC
Location: 10329 - 12026 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp905201175
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.