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Cluster: Rep_1013_CGC1

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1013_c_2 Rep_1013_c_2_1 351 1085 + 3.A.1.3.16
TC Rep_1013_c_2 Rep_1013_c_2_2 1102 1935 + 3.A.1.3.16
TC Rep_1013_c_2 Rep_1013_c_2_3 1998 2732 + 3.A.1.3.16
TC Rep_1013_c_2 Rep_1013_c_2_4 2725 3492 + 3.A.1.3.18
TC Rep_1013_c_2 Rep_1013_c_2_5 3506 4108 + 2.A.115.2.14
pfam Rep_1013_c_2 Rep_1013_c_2_6 4177 5040 - TatD_DNase
pfam Rep_1013_c_2 Rep_1013_c_2_7 5043 6080 - 3Beta_HSD | Epimerase | RmlD_sub_bind | GDP_Man_Dehyd
CAZyme Rep_1013_c_2 Rep_1013_c_2_8 6077 7687 - GT83
TC Rep_1013_c_2 Rep_1013_c_2_9 7898 9163 - 2.A.56.1.1
pfam Rep_1013_c_2 Rep_1013_c_2_10 9164 9679 - DctQ
TC Rep_1013_c_2 Rep_1013_c_2_11 9761 10753 - 2.A.56.1.2
pfam Rep_1013_c_2 Rep_1013_c_2_12 11593 12528 - EamA | EamA
CAZyme Rep_1013_c_2 Rep_1013_c_2_13 12576 13310 - GT2
pfam Rep_1013_c_2 Rep_1013_c_2_14 13417 13776 + HIT | DcpS_C
NULL(UNKNOWN) Rep_1013_c_2 Rep_1013_c_2_15 13856 14719 + NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1013_c_2 Rep_1013_c_2_16 14732 16666 + 3.A.1.121.4
pfam Rep_1013_c_2 Rep_1013_c_2_17 16678 17520 - RsmJ
TF Rep_1013_c_2 Rep_1013_c_2_18 17736 18158 + FUR
TC Rep_1013_c_2 Rep_1013_c_2_19 18160 19071 + 3.A.1.15.13
TC Rep_1013_c_2 Rep_1013_c_2_20 19082 19774 + 3.A.1.15.15
TC Rep_1013_c_2 Rep_1013_c_2_21 19771 20580 + 3.A.1.15.11
Gene ID: Rep_1013_c_2_1
Type: TC
Location: 351 - 1085 (+)
Gene ID: Rep_1013_c_2_2
Type: TC
Location: 1102 - 1935 (+)
Gene ID: Rep_1013_c_2_3
Type: TC
Location: 1998 - 2732 (+)
Gene ID: Rep_1013_c_2_4
Type: TC
Location: 2725 - 3492 (+)
Gene ID: Rep_1013_c_2_5
Type: TC
Location: 3506 - 4108 (+)
Gene ID: Rep_1013_c_2_6
Type: pfam
Location: 4177 - 5040 (-)
Gene ID: Rep_1013_c_2_7
Type: pfam
Location: 5043 - 6080 (-)
Gene ID: Rep_1013_c_2_8
Type: CAZyme
Location: 6077 - 7687 (-)
Gene ID: Rep_1013_c_2_9
Type: TC
Location: 7898 - 9163 (-)
Gene ID: Rep_1013_c_2_10
Type: pfam
Location: 9164 - 9679 (-)
Gene ID: Rep_1013_c_2_11
Type: TC
Location: 9761 - 10753 (-)
Gene ID: Rep_1013_c_2_12
Type: pfam
Location: 11593 - 12528 (-)
Gene ID: Rep_1013_c_2_13
Type: CAZyme
Location: 12576 - 13310 (-)
Gene ID: Rep_1013_c_2_14
Type: pfam
Location: 13417 - 13776 (+)
Gene ID: Rep_1013_c_2_15
Type:
Location: 13856 - 14719 (+)
Gene ID: Rep_1013_c_2_16
Type: TC
Location: 14732 - 16666 (+)
Gene ID: Rep_1013_c_2_17
Type: pfam
Location: 16678 - 17520 (-)
Gene ID: Rep_1013_c_2_18
Type: TF
Location: 17736 - 18158 (+)
Gene ID: Rep_1013_c_2_19
Type: TC
Location: 18160 - 19071 (+)
Gene ID: Rep_1013_c_2_20
Type: TC
Location: 19082 - 19774 (+)
Gene ID: Rep_1013_c_2_21
Type: TC
Location: 19771 - 20580 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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