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Cluster: Rep_1009_CGC8

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1009_c_0 Rep_1009_c_0_1192 1319894 1321144 + 1.B.52.2.1
pfam Rep_1009_c_0 Rep_1009_c_0_1193 1321395 1321661 + Ribosomal_S15
pfam Rep_1009_c_0 Rep_1009_c_0_1194 1321773 1323998 + KH_1 | S1 | RNase_PH | RNase_PH | RNase_PH_C | RNase_PH_C | PNPase
TC Rep_1009_c_0 Rep_1009_c_0_1195 1324083 1325459 + 2.A.22.5.3
TC Rep_1009_c_0 Rep_1009_c_0_1196 1325461 1326834 + 2.A.22.5.3
TC Rep_1009_c_0 Rep_1009_c_0_1197 1326853 1328229 + 2.A.22.5.3
NULL(UNKNOWN) Rep_1009_c_0 Rep_1009_c_0_1198 1328382 1329512 + NULL(UNKNOWN)
[View Structural Homologs]
CAZyme Rep_1009_c_0 Rep_1009_c_0_1199 1329577 1330653 + GH23
Gene ID: Rep_1009_c_0_1192
Type: TC
Location: 1319894 - 1321144 (+)
Gene ID: Rep_1009_c_0_1193
Type: pfam
Location: 1321395 - 1321661 (+)
Gene ID: Rep_1009_c_0_1194
Type: pfam
Location: 1321773 - 1323998 (+)
Gene ID: Rep_1009_c_0_1195
Type: TC
Location: 1324083 - 1325459 (+)
Gene ID: Rep_1009_c_0_1196
Type: TC
Location: 1325461 - 1326834 (+)
Gene ID: Rep_1009_c_0_1197
Type: TC
Location: 1326853 - 1328229 (+)
Gene ID: Rep_1009_c_0_1198
Type:
Location: 1328382 - 1329512 (+)
Gene ID: Rep_1009_c_0_1199
Type: CAZyme
Location: 1329577 - 1330653 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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