Cluster: Rep_1008_CGC9
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1008
- CGC Family ID: CGCFAM_01210
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1008_c_0 | Rep_1008_c_0_1165 | 1136746 | 1137963 | - | 2.A.1.2.97 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_1166 | 1138116 | 1138412 | - | 4.F.1.1.8 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_1167 | 1138426 | 1138698 | - | 4.F.1.1.8 |
| pfam | Rep_1008_c_0 | Rep_1008_c_0_1168 | 1138747 | 1139532 | - | PseudoU_synth_1 | PseudoU_synth_1 |
| pfam | Rep_1008_c_0 | Rep_1008_c_0_1169 | 1139545 | 1139943 | - | GtrA_DPMS_TM |
| TC | Rep_1008_c_0 | Rep_1008_c_0_1170 | 1139944 | 1140393 | - | 4.D.2.1.9 |
| CAZyme | Rep_1008_c_0 | Rep_1008_c_0_1171 | 1140354 | 1140971 | - | GT2 |
Gene ID: Rep_1008_c_0_1165
Type: TC
Location: 1136746 - 1137963 (-)
Type: TC
Location: 1136746 - 1137963 (-)
Gene ID: Rep_1008_c_0_1166
Type: TC
Location: 1138116 - 1138412 (-)
Type: TC
Location: 1138116 - 1138412 (-)
Gene ID: Rep_1008_c_0_1167
Type: TC
Location: 1138426 - 1138698 (-)
Type: TC
Location: 1138426 - 1138698 (-)
Gene ID: Rep_1008_c_0_1168
Type: pfam
Location: 1138747 - 1139532 (-)
Type: pfam
Location: 1138747 - 1139532 (-)
Gene ID: Rep_1008_c_0_1169
Type: pfam
Location: 1139545 - 1139943 (-)
Type: pfam
Location: 1139545 - 1139943 (-)
Gene ID: Rep_1008_c_0_1170
Type: TC
Location: 1139944 - 1140393 (-)
Type: TC
Location: 1139944 - 1140393 (-)
Gene ID: Rep_1008_c_0_1171
Type: CAZyme
Location: 1140354 - 1140971 (-)
Type: CAZyme
Location: 1140354 - 1140971 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp902465145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.