Cluster: Rep_1008_CGC8
🧬 Cluster Details
- Gene Count: 12
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1008
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1008_c_0 | Rep_1008_c_0_733 | 770404 | 770904 | + | 2.A.102.3.1 |
| NULL(UNKNOWN) | Rep_1008_c_0 | Rep_1008_c_0_734 | 770931 | 771188 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| STP | Rep_1008_c_0 | Rep_1008_c_0_735 | 771217 | 771540 | + | AraC_binding |
| CAZyme | Rep_1008_c_0 | Rep_1008_c_0_736 | 771591 | 772715 | - | GH13_31 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_737 | 772922 | 773413 | - | 8.A.9.1.1 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_738 | 773477 | 773725 | - | 2.A.66.1.3 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_739 | 773704 | 774858 | - | 2.A.66.1.3 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_740 | 775120 | 775734 | + | 1.A.11.1.1 |
| TC | Rep_1008_c_0 | Rep_1008_c_0_741 | 775743 | 776426 | + | 1.A.11.1.1 |
| pfam | Rep_1008_c_0 | Rep_1008_c_0_742 | 776459 | 776797 | + | P-II |
| NULL(UNKNOWN) | Rep_1008_c_0 | Rep_1008_c_0_743 | 777122 | 777358 | + |
NULL(UNKNOWN)
[View Structural Homologs] |
| TC | Rep_1008_c_0 | Rep_1008_c_0_744 | 777532 | 778731 | - | 2.A.1.35.1 |
Gene ID: Rep_1008_c_0_733
Type: TC
Location: 770404 - 770904 (+)
Type: TC
Location: 770404 - 770904 (+)
Gene ID: Rep_1008_c_0_734
Type:
Location: 770931 - 771188 (+)
Type:
Location: 770931 - 771188 (+)
Gene ID: Rep_1008_c_0_735
Type: STP
Location: 771217 - 771540 (+)
Type: STP
Location: 771217 - 771540 (+)
Gene ID: Rep_1008_c_0_736
Type: CAZyme
Location: 771591 - 772715 (-)
Type: CAZyme
Location: 771591 - 772715 (-)
Gene ID: Rep_1008_c_0_737
Type: TC
Location: 772922 - 773413 (-)
Type: TC
Location: 772922 - 773413 (-)
Gene ID: Rep_1008_c_0_738
Type: TC
Location: 773477 - 773725 (-)
Type: TC
Location: 773477 - 773725 (-)
Gene ID: Rep_1008_c_0_739
Type: TC
Location: 773704 - 774858 (-)
Type: TC
Location: 773704 - 774858 (-)
Gene ID: Rep_1008_c_0_740
Type: TC
Location: 775120 - 775734 (+)
Type: TC
Location: 775120 - 775734 (+)
Gene ID: Rep_1008_c_0_741
Type: TC
Location: 775743 - 776426 (+)
Type: TC
Location: 775743 - 776426 (+)
Gene ID: Rep_1008_c_0_742
Type: pfam
Location: 776459 - 776797 (+)
Type: pfam
Location: 776459 - 776797 (+)
Gene ID: Rep_1008_c_0_743
Type:
Location: 777122 - 777358 (+)
Type:
Location: 777122 - 777358 (+)
Gene ID: Rep_1008_c_0_744
Type: TC
Location: 777532 - 778731 (-)
Type: TC
Location: 777532 - 778731 (-)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Succinivibrionaceae
Genus
Succinivibrio
Species
Succinivibrio sp902465145
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.