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Cluster: Rep_1008_CGC2

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1008_c_0 Rep_1008_c_0_79 88101 89645 + 3.D.2.1.1
TC Rep_1008_c_0 Rep_1008_c_0_80 89664 91103 + 3.D.2.1.1
NULL(UNKNOWN) Rep_1008_c_0 Rep_1008_c_0_81 91208 91480 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1008_c_0 Rep_1008_c_0_82 91487 92242 + LGT
TC Rep_1008_c_0 Rep_1008_c_0_83 92304 92855 - 4.A.1.1.15
TC Rep_1008_c_0 Rep_1008_c_0_84 92876 94540 - 8.A.7.1.4
TC Rep_1008_c_0 Rep_1008_c_0_85 94554 95324 - 2.A.121.1.1
pfam Rep_1008_c_0 Rep_1008_c_0_86 95486 96262 + ZipA_C
pfam Rep_1008_c_0 Rep_1008_c_0_87 96356 98428 + BRCT | DNA_ligase_aden | DNA_ligase_ZBD | DNA_ligase_OB | PTCB-BRCT | HHH_2 | HHH_5
CAZyme Rep_1008_c_0 Rep_1008_c_0_88 98479 99480 - GH23
Gene ID: Rep_1008_c_0_79
Type: TC
Location: 88101 - 89645 (+)
Gene ID: Rep_1008_c_0_80
Type: TC
Location: 89664 - 91103 (+)
Gene ID: Rep_1008_c_0_81
Type:
Location: 91208 - 91480 (+)
Gene ID: Rep_1008_c_0_82
Type: pfam
Location: 91487 - 92242 (+)
Gene ID: Rep_1008_c_0_83
Type: TC
Location: 92304 - 92855 (-)
Gene ID: Rep_1008_c_0_84
Type: TC
Location: 92876 - 94540 (-)
Gene ID: Rep_1008_c_0_85
Type: TC
Location: 94554 - 95324 (-)
Gene ID: Rep_1008_c_0_86
Type: pfam
Location: 95486 - 96262 (+)
Gene ID: Rep_1008_c_0_87
Type: pfam
Location: 96356 - 98428 (+)
Gene ID: Rep_1008_c_0_88
Type: CAZyme
Location: 98479 - 99480 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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