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Cluster: Rep_1004_CGC50

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_36 Rep_1004_c_36_38 42153 42758 + GH23
pfam Rep_1004_c_36 Rep_1004_c_36_39 42822 44990 - Radical_SAM | Radical_SAM_N | DUF3362
TF Rep_1004_c_36 Rep_1004_c_36_40 45071 45805 - GntR
TC Rep_1004_c_36 Rep_1004_c_36_41 46464 47861 + 2.A.39.1.6
STP Rep_1004_c_36 Rep_1004_c_36_42 47858 48790 + PfkB
TC Rep_1004_c_36 Rep_1004_c_36_43 48825 50075 - 2.A.1.10.2
pfam Rep_1004_c_36 Rep_1004_c_36_44 50157 50978 - PNP_UDP_1
TF Rep_1004_c_36 Rep_1004_c_36_45 51116 52027 + HTH_1
TC Rep_1004_c_36 Rep_1004_c_36_46 52045 53460 - 1.B.76.1.8
Gene ID: Rep_1004_c_36_38
Type: CAZyme
Location: 42153 - 42758 (+)
Gene ID: Rep_1004_c_36_39
Type: pfam
Location: 42822 - 44990 (-)
Gene ID: Rep_1004_c_36_40
Type: TF
Location: 45071 - 45805 (-)
Gene ID: Rep_1004_c_36_41
Type: TC
Location: 46464 - 47861 (+)
Gene ID: Rep_1004_c_36_42
Type: STP
Location: 47858 - 48790 (+)
Gene ID: Rep_1004_c_36_43
Type: TC
Location: 48825 - 50075 (-)
Gene ID: Rep_1004_c_36_44
Type: pfam
Location: 50157 - 50978 (-)
Gene ID: Rep_1004_c_36_45
Type: TF
Location: 51116 - 52027 (+)
Gene ID: Rep_1004_c_36_46
Type: TC
Location: 52045 - 53460 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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