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Cluster: Rep_1004_CGC49

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_36 Rep_1004_c_36_25 25902 28025 + 1.B.14.1.12
STP Rep_1004_c_36 Rep_1004_c_36_26 28222 29148 + PfkB
TC Rep_1004_c_36 Rep_1004_c_36_27 29339 30751 + 1.B.15.1.1
TC Rep_1004_c_36 Rep_1004_c_36_28 30815 32185 + 4.A.1.2.1
CAZyme Rep_1004_c_36 Rep_1004_c_36_29 32185 33594 + GH32
TF Rep_1004_c_36 Rep_1004_c_36_30 33625 34659 + LacI
TC Rep_1004_c_36 Rep_1004_c_36_31 34715 35131 - 1.A.30.2.1
TC Rep_1004_c_36 Rep_1004_c_36_32 35141 36118 - 1.A.30.2.1
pfam Rep_1004_c_36 Rep_1004_c_36_33 36550 37761 + Cys_Met_Meta_PP
TC Rep_1004_c_36 Rep_1004_c_36_34 37892 38554 + 9.B.27.2.1
Gene ID: Rep_1004_c_36_25
Type: TC
Location: 25902 - 28025 (+)
Gene ID: Rep_1004_c_36_26
Type: STP
Location: 28222 - 29148 (+)
Gene ID: Rep_1004_c_36_27
Type: TC
Location: 29339 - 30751 (+)
Gene ID: Rep_1004_c_36_28
Type: TC
Location: 30815 - 32185 (+)
Gene ID: Rep_1004_c_36_29
Type: CAZyme
Location: 32185 - 33594 (+)
Gene ID: Rep_1004_c_36_30
Type: TF
Location: 33625 - 34659 (+)
Gene ID: Rep_1004_c_36_31
Type: TC
Location: 34715 - 35131 (-)
Gene ID: Rep_1004_c_36_32
Type: TC
Location: 35141 - 36118 (-)
Gene ID: Rep_1004_c_36_33
Type: pfam
Location: 36550 - 37761 (+)
Gene ID: Rep_1004_c_36_34
Type: TC
Location: 37892 - 38554 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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