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Cluster: Rep_1004_CGC48

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_33 Rep_1004_c_33_39 42901 44190 - 1.B.3.1.1
TC Rep_1004_c_33 Rep_1004_c_33_40 44223 45332 - 3.A.1.1.1
CAZyme Rep_1004_c_33 Rep_1004_c_33_41 45325 46296 - GH13
TC Rep_1004_c_33 Rep_1004_c_33_42 46655 47848 + 3.A.1.1.1
TC Rep_1004_c_33 Rep_1004_c_33_43 47906 49483 + 3.A.1.1.1
TC Rep_1004_c_33 Rep_1004_c_33_44 49495 50385 + 3.A.1.1.1
pfam Rep_1004_c_33 Rep_1004_c_33_45 50474 50881 - PsiE
TC Rep_1004_c_33 Rep_1004_c_33_46 51107 52540 + 1.B.73.1.1
Gene ID: Rep_1004_c_33_39
Type: TC
Location: 42901 - 44190 (-)
Gene ID: Rep_1004_c_33_40
Type: TC
Location: 44223 - 45332 (-)
Gene ID: Rep_1004_c_33_41
Type: CAZyme
Location: 45325 - 46296 (-)
Gene ID: Rep_1004_c_33_42
Type: TC
Location: 46655 - 47848 (+)
Gene ID: Rep_1004_c_33_43
Type: TC
Location: 47906 - 49483 (+)
Gene ID: Rep_1004_c_33_44
Type: TC
Location: 49495 - 50385 (+)
Gene ID: Rep_1004_c_33_45
Type: pfam
Location: 50474 - 50881 (-)
Gene ID: Rep_1004_c_33_46
Type: TC
Location: 51107 - 52540 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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