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Cluster: Rep_1004_CGC46

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_31 Rep_1004_c_31_477 539269 540240 - 8.A.5.1.6
pfam Rep_1004_c_31 Rep_1004_c_31_478 540253 541053 - adh_short | KR | adh_short_C2 | SDR
TF Rep_1004_c_31 Rep_1004_c_31_479 541160 542053 + HTH_1
TC Rep_1004_c_31 Rep_1004_c_31_480 542470 542787 + 4.A.3.2.5
TC Rep_1004_c_31 Rep_1004_c_31_481 542800 544161 + 4.A.3.2.5
CAZyme Rep_1004_c_31 Rep_1004_c_31_482 544205 545590 + GH1
TF Rep_1004_c_31 Rep_1004_c_31_483 545606 546454 + HTH_AraC
pfam Rep_1004_c_31 Rep_1004_c_31_484 546603 547364 + YdjC
TC Rep_1004_c_31 Rep_1004_c_31_485 547376 548755 - 2.A.1.26.1
Gene ID: Rep_1004_c_31_477
Type: TC
Location: 539269 - 540240 (-)
Gene ID: Rep_1004_c_31_478
Type: pfam
Location: 540253 - 541053 (-)
Gene ID: Rep_1004_c_31_479
Type: TF
Location: 541160 - 542053 (+)
Gene ID: Rep_1004_c_31_480
Type: TC
Location: 542470 - 542787 (+)
Gene ID: Rep_1004_c_31_481
Type: TC
Location: 542800 - 544161 (+)
Gene ID: Rep_1004_c_31_482
Type: CAZyme
Location: 544205 - 545590 (+)
Gene ID: Rep_1004_c_31_483
Type: TF
Location: 545606 - 546454 (+)
Gene ID: Rep_1004_c_31_484
Type: pfam
Location: 546603 - 547364 (+)
Gene ID: Rep_1004_c_31_485
Type: TC
Location: 547376 - 548755 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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