Cluster: Rep_1004_CGC44
🧬 Cluster Details
- Gene Count: 4
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_31 | Rep_1004_c_31_405 | 458336 | 459418 | + | 9.B.146.1.6 |
| pfam | Rep_1004_c_31 | Rep_1004_c_31_406 | 459421 | 460740 | + | Mur_ligase_C | Mur_ligase_M | MurD-like_N |
| TC | Rep_1004_c_31 | Rep_1004_c_31_407 | 460737 | 461939 | + | 2.A.103.1.1 |
| CAZyme | Rep_1004_c_31 | Rep_1004_c_31_408 | 461943 | 463007 | + | GT28 |
Gene ID: Rep_1004_c_31_405
Type: TC
Location: 458336 - 459418 (+)
Type: TC
Location: 458336 - 459418 (+)
Gene ID: Rep_1004_c_31_406
Type: pfam
Location: 459421 - 460740 (+)
Type: pfam
Location: 459421 - 460740 (+)
Gene ID: Rep_1004_c_31_407
Type: TC
Location: 460737 - 461939 (+)
Type: TC
Location: 460737 - 461939 (+)
Gene ID: Rep_1004_c_31_408
Type: CAZyme
Location: 461943 - 463007 (+)
Type: CAZyme
Location: 461943 - 463007 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.