Cluster: Rep_1004_CGC43
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_31 | Rep_1004_c_31_324 | 358086 | 359753 | - | 3.A.1.120.6 |
| TC | Rep_1004_c_31 | Rep_1004_c_31_325 | 359896 | 360393 | - | 1.B.6.1.21 |
| STP | Rep_1004_c_31 | Rep_1004_c_31_326 | 360432 | 361679 | - | GGDEF |
| pfam | Rep_1004_c_31 | Rep_1004_c_31_327 | 361676 | 362281 | - | DUF4154 |
| CAZyme | Rep_1004_c_31 | Rep_1004_c_31_328 | 362921 | 364849 | + | GH23 |
Gene ID: Rep_1004_c_31_324
Type: TC
Location: 358086 - 359753 (-)
Type: TC
Location: 358086 - 359753 (-)
Gene ID: Rep_1004_c_31_325
Type: TC
Location: 359896 - 360393 (-)
Type: TC
Location: 359896 - 360393 (-)
Gene ID: Rep_1004_c_31_326
Type: STP
Location: 360432 - 361679 (-)
Type: STP
Location: 360432 - 361679 (-)
Gene ID: Rep_1004_c_31_327
Type: pfam
Location: 361676 - 362281 (-)
Type: pfam
Location: 361676 - 362281 (-)
Gene ID: Rep_1004_c_31_328
Type: CAZyme
Location: 362921 - 364849 (+)
Type: CAZyme
Location: 362921 - 364849 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.