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Cluster: Rep_1004_CGC42

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_31 Rep_1004_c_31_201 230014 231444 - GH1
TC Rep_1004_c_31 Rep_1004_c_31_202 231461 232903 - 4.A.1.2.3
TF Rep_1004_c_31 Rep_1004_c_31_203 233188 234210 + LacI
TF Rep_1004_c_31 Rep_1004_c_31_204 234322 235200 + 0035607 | 0036286
TC Rep_1004_c_31 Rep_1004_c_31_205 235301 236977 + 3.A.1.21.2
TC Rep_1004_c_31 Rep_1004_c_31_206 236967 238604 + 3.A.1.21.1
TC Rep_1004_c_31 Rep_1004_c_31_207 238692 240830 + 1.B.14.1.8
NULL(UNKNOWN) Rep_1004_c_31 Rep_1004_c_31_208 240830 241078 + NULL(UNKNOWN)
[View Structural Homologs]
pfam Rep_1004_c_31 Rep_1004_c_31_209 241075 242496 + PepSY_TM
TC Rep_1004_c_31 Rep_1004_c_31_210 242500 243726 + 2.A.1.57.1
NULL(UNKNOWN) Rep_1004_c_31 Rep_1004_c_31_211 243884 244306 - NULL(UNKNOWN)
[View Structural Homologs]
TC Rep_1004_c_31 Rep_1004_c_31_212 244363 245325 - 9.B.10.1.1
pfam Rep_1004_c_31 Rep_1004_c_31_213 245347 245550 - Sel_put
TC Rep_1004_c_31 Rep_1004_c_31_214 245839 248019 - 2.A.114.1.10
TF Rep_1004_c_31 Rep_1004_c_31_215 248281 249165 - HTH_1
TC Rep_1004_c_31 Rep_1004_c_31_216 249193 249885 - 9.B.20.1.1
TC Rep_1004_c_31 Rep_1004_c_31_217 249998 250777 - 3.A.1.16.2
TC Rep_1004_c_31 Rep_1004_c_31_218 251363 252445 - 1.B.1.1.16
TC Rep_1004_c_31 Rep_1004_c_31_219 252478 253269 - 3.A.1.17.1
TC Rep_1004_c_31 Rep_1004_c_31_220 253285 255006 - 3.A.1.17.9
CAZyme Rep_1004_c_31 Rep_1004_c_31_221 255491 256180 - GT20
Gene ID: Rep_1004_c_31_201
Type: CAZyme
Location: 230014 - 231444 (-)
Gene ID: Rep_1004_c_31_202
Type: TC
Location: 231461 - 232903 (-)
Gene ID: Rep_1004_c_31_203
Type: TF
Location: 233188 - 234210 (+)
Gene ID: Rep_1004_c_31_204
Type: TF
Location: 234322 - 235200 (+)
Gene ID: Rep_1004_c_31_205
Type: TC
Location: 235301 - 236977 (+)
Gene ID: Rep_1004_c_31_206
Type: TC
Location: 236967 - 238604 (+)
Gene ID: Rep_1004_c_31_207
Type: TC
Location: 238692 - 240830 (+)
Gene ID: Rep_1004_c_31_208
Type:
Location: 240830 - 241078 (+)
Gene ID: Rep_1004_c_31_209
Type: pfam
Location: 241075 - 242496 (+)
Gene ID: Rep_1004_c_31_210
Type: TC
Location: 242500 - 243726 (+)
Gene ID: Rep_1004_c_31_211
Type:
Location: 243884 - 244306 (-)
Gene ID: Rep_1004_c_31_212
Type: TC
Location: 244363 - 245325 (-)
Gene ID: Rep_1004_c_31_213
Type: pfam
Location: 245347 - 245550 (-)
Gene ID: Rep_1004_c_31_214
Type: TC
Location: 245839 - 248019 (-)
Gene ID: Rep_1004_c_31_215
Type: TF
Location: 248281 - 249165 (-)
Gene ID: Rep_1004_c_31_216
Type: TC
Location: 249193 - 249885 (-)
Gene ID: Rep_1004_c_31_217
Type: TC
Location: 249998 - 250777 (-)
Gene ID: Rep_1004_c_31_218
Type: TC
Location: 251363 - 252445 (-)
Gene ID: Rep_1004_c_31_219
Type: TC
Location: 252478 - 253269 (-)
Gene ID: Rep_1004_c_31_220
Type: TC
Location: 253285 - 255006 (-)
Gene ID: Rep_1004_c_31_221
Type: CAZyme
Location: 255491 - 256180 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

Loading chart...

No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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