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Cluster: Rep_1004_CGC4

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_8 Rep_1004_c_8_92 94732 95568 + 9.B.104.1.1
TF Rep_1004_c_8 Rep_1004_c_8_93 95619 96377 + HTH_DeoR
pfam Rep_1004_c_8 Rep_1004_c_8_94 96625 98133 + DAO | DAO_C
CAZyme Rep_1004_c_8 Rep_1004_c_8_95 98194 100641 - GT35
CAZyme Rep_1004_c_8 Rep_1004_c_8_96 100783 102213 - GT5
pfam Rep_1004_c_8 Rep_1004_c_8_97 102349 103626 - NTP_transferase | NTP_transf_3 | Hexapep_GlmU
CAZyme Rep_1004_c_8 Rep_1004_c_8_98 103642 105624 - CBM48 | GH13_11
CAZyme Rep_1004_c_8 Rep_1004_c_8_99 105621 107807 - CBM48 | GH13_9
pfam Rep_1004_c_8 Rep_1004_c_8_100 108250 109353 - Semialdhyde_dh | Semialdhyde_dhC
TC Rep_1004_c_8 Rep_1004_c_8_101 109547 110140 + 2.A.95.1.5
STP Rep_1004_c_8 Rep_1004_c_8_102 110171 110698 - SKI
TC Rep_1004_c_8 Rep_1004_c_8_103 110800 112116 - 2.A.8.1.4
Gene ID: Rep_1004_c_8_92
Type: TC
Location: 94732 - 95568 (+)
Gene ID: Rep_1004_c_8_93
Type: TF
Location: 95619 - 96377 (+)
Gene ID: Rep_1004_c_8_94
Type: pfam
Location: 96625 - 98133 (+)
Gene ID: Rep_1004_c_8_95
Type: CAZyme
Location: 98194 - 100641 (-)
Gene ID: Rep_1004_c_8_96
Type: CAZyme
Location: 100783 - 102213 (-)
Gene ID: Rep_1004_c_8_97
Type: pfam
Location: 102349 - 103626 (-)
Gene ID: Rep_1004_c_8_98
Type: CAZyme
Location: 103642 - 105624 (-)
Gene ID: Rep_1004_c_8_99
Type: CAZyme
Location: 105621 - 107807 (-)
Gene ID: Rep_1004_c_8_100
Type: pfam
Location: 108250 - 109353 (-)
Gene ID: Rep_1004_c_8_101
Type: TC
Location: 109547 - 110140 (+)
Gene ID: Rep_1004_c_8_102
Type: STP
Location: 110171 - 110698 (-)
Gene ID: Rep_1004_c_8_103
Type: TC
Location: 110800 - 112116 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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