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Cluster: Rep_1004_CGC39

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_27 Rep_1004_c_27_776 827954 828997 + GH103
sulfatase Rep_1004_c_27 Rep_1004_c_27_777 829056 829712 + S1_6
pfam Rep_1004_c_27 Rep_1004_c_27_778 829834 830280 + CxxCxxCC
TC Rep_1004_c_27 Rep_1004_c_27_779 830957 831487 - 5.A.2.1.1
TC Rep_1004_c_27 Rep_1004_c_27_780 831608 833173 - 2.A.34.1.1
TF Rep_1004_c_27 Rep_1004_c_27_781 833417 834136 + GntR
pfam Rep_1004_c_27 Rep_1004_c_27_782 834194 835729 - SpoVR | SpoVR_C
TC Rep_1004_c_27 Rep_1004_c_27_783 836006 836677 + 3.A.1.15.3
Gene ID: Rep_1004_c_27_776
Type: CAZyme
Location: 827954 - 828997 (+)
Gene ID: Rep_1004_c_27_777
Type: sulfatase
Location: 829056 - 829712 (+)
Gene ID: Rep_1004_c_27_778
Type: pfam
Location: 829834 - 830280 (+)
Gene ID: Rep_1004_c_27_779
Type: TC
Location: 830957 - 831487 (-)
Gene ID: Rep_1004_c_27_780
Type: TC
Location: 831608 - 833173 (-)
Gene ID: Rep_1004_c_27_781
Type: TF
Location: 833417 - 834136 (+)
Gene ID: Rep_1004_c_27_782
Type: pfam
Location: 834194 - 835729 (-)
Gene ID: Rep_1004_c_27_783
Type: TC
Location: 836006 - 836677 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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