Cluster: Rep_1004_CGC33
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1004_c_27 | Rep_1004_c_27_3 | 1352 | 1945 | - | AA10 |
| TF | Rep_1004_c_27 | Rep_1004_c_27_4 | 2350 | 3291 | + | HTH_1 |
| CAZyme | Rep_1004_c_27 | Rep_1004_c_27_5 | 3378 | 4877 | - | GH18 |
| TC | Rep_1004_c_27 | Rep_1004_c_27_6 | 5170 | 5496 | + | 1.E.2.1.11 |
| TC | Rep_1004_c_27 | Rep_1004_c_27_7 | 5486 | 5887 | + | 1.E.2.1.11 |
Gene ID: Rep_1004_c_27_3
Type: CAZyme
Location: 1352 - 1945 (-)
Type: CAZyme
Location: 1352 - 1945 (-)
Gene ID: Rep_1004_c_27_4
Type: TF
Location: 2350 - 3291 (+)
Type: TF
Location: 2350 - 3291 (+)
Gene ID: Rep_1004_c_27_5
Type: CAZyme
Location: 3378 - 4877 (-)
Type: CAZyme
Location: 3378 - 4877 (-)
Gene ID: Rep_1004_c_27_6
Type: TC
Location: 5170 - 5496 (+)
Type: TC
Location: 5170 - 5496 (+)
Gene ID: Rep_1004_c_27_7
Type: TC
Location: 5486 - 5887 (+)
Type: TC
Location: 5486 - 5887 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.