Cluster: Rep_1004_CGC31
🧬 Cluster Details
- Gene Count: 7
- CAZyme Count: 2
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_26 | Rep_1004_c_26_38 | 42376 | 42726 | - | 8.A.2.1.3 |
| CAZyme | Rep_1004_c_26 | Rep_1004_c_26_39 | 42941 | 44617 | + | AA1 |
| STP | Rep_1004_c_26 | Rep_1004_c_26_40 | 44737 | 45252 | + | Pribosyltran |
| TC | Rep_1004_c_26 | Rep_1004_c_26_41 | 45290 | 45946 | - | 2.A.53.3.8 |
| TC | Rep_1004_c_26 | Rep_1004_c_26_42 | 46157 | 47080 | + | 3.A.1.105.17 |
| TC | Rep_1004_c_26 | Rep_1004_c_26_43 | 47077 | 47847 | + | 3.A.1.105.17 |
| CAZyme | Rep_1004_c_26 | Rep_1004_c_26_44 | 48025 | 49305 | + | CE4 |
Gene ID: Rep_1004_c_26_38
Type: TC
Location: 42376 - 42726 (-)
Type: TC
Location: 42376 - 42726 (-)
Gene ID: Rep_1004_c_26_39
Type: CAZyme
Location: 42941 - 44617 (+)
Type: CAZyme
Location: 42941 - 44617 (+)
Gene ID: Rep_1004_c_26_40
Type: STP
Location: 44737 - 45252 (+)
Type: STP
Location: 44737 - 45252 (+)
Gene ID: Rep_1004_c_26_41
Type: TC
Location: 45290 - 45946 (-)
Type: TC
Location: 45290 - 45946 (-)
Gene ID: Rep_1004_c_26_42
Type: TC
Location: 46157 - 47080 (+)
Type: TC
Location: 46157 - 47080 (+)
Gene ID: Rep_1004_c_26_43
Type: TC
Location: 47077 - 47847 (+)
Type: TC
Location: 47077 - 47847 (+)
Gene ID: Rep_1004_c_26_44
Type: CAZyme
Location: 48025 - 49305 (+)
Type: CAZyme
Location: 48025 - 49305 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
Loading chart...
No differentially abundant genes found in the 2019 study.