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Cluster: Rep_1004_CGC30

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
CAZyme Rep_1004_c_17 Rep_1004_c_17_525 573688 575118 + GH1
pfam Rep_1004_c_17 Rep_1004_c_17_526 575189 576367 - FAD_binding_3
TC Rep_1004_c_17 Rep_1004_c_17_527 576372 577727 - 2.A.1.15.1
STP Rep_1004_c_17 Rep_1004_c_17_528 578113 579456 - PALP
pfam Rep_1004_c_17 Rep_1004_c_17_529 579719 580192 - 3-dmu-9_3-mt
TC Rep_1004_c_17 Rep_1004_c_17_530 580203 580553 - 3.A.5.1.1
TC Rep_1004_c_17 Rep_1004_c_17_531 580658 582100 - 9.B.34.1.2
Gene ID: Rep_1004_c_17_525
Type: CAZyme
Location: 573688 - 575118 (+)
Gene ID: Rep_1004_c_17_526
Type: pfam
Location: 575189 - 576367 (-)
Gene ID: Rep_1004_c_17_527
Type: TC
Location: 576372 - 577727 (-)
Gene ID: Rep_1004_c_17_528
Type: STP
Location: 578113 - 579456 (-)
Gene ID: Rep_1004_c_17_529
Type: pfam
Location: 579719 - 580192 (-)
Gene ID: Rep_1004_c_17_530
Type: TC
Location: 580203 - 580553 (-)
Gene ID: Rep_1004_c_17_531
Type: TC
Location: 580658 - 582100 (-)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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Differentially Abundant Genes

Gene ID Condition Pair log2FC FDR P-value
Rep_1004_c_17_525 vegan > omnivore 1.08407 0.03783
Rep_1004_c_17_525 vegetarian > omnivore 1.42884 0.02695

🧭 Explore Read Mapping of CGC

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