Cluster: Rep_1004_CGC3
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_8 | Rep_1004_c_8_35 | 32326 | 34011 | - | 9.B.33.1.1 |
| pfam | Rep_1004_c_8 | Rep_1004_c_8_36 | 34168 | 34737 | - | Pro_isomerase |
| TC | Rep_1004_c_8 | Rep_1004_c_8_37 | 35091 | 35429 | + | 4.A.3.2.9 |
| CAZyme | Rep_1004_c_8 | Rep_1004_c_8_38 | 35426 | 36733 | + | GH4 |
| TF | Rep_1004_c_8 | Rep_1004_c_8_39 | 36807 | 37787 | + | LacI |
| TC | Rep_1004_c_8 | Rep_1004_c_8_40 | 37979 | 39163 | + | 2.A.1.7.14 |
Gene ID: Rep_1004_c_8_35
Type: TC
Location: 32326 - 34011 (-)
Type: TC
Location: 32326 - 34011 (-)
Gene ID: Rep_1004_c_8_36
Type: pfam
Location: 34168 - 34737 (-)
Type: pfam
Location: 34168 - 34737 (-)
Gene ID: Rep_1004_c_8_37
Type: TC
Location: 35091 - 35429 (+)
Type: TC
Location: 35091 - 35429 (+)
Gene ID: Rep_1004_c_8_38
Type: CAZyme
Location: 35426 - 36733 (+)
Type: CAZyme
Location: 35426 - 36733 (+)
Gene ID: Rep_1004_c_8_39
Type: TF
Location: 36807 - 37787 (+)
Type: TF
Location: 36807 - 37787 (+)
Gene ID: Rep_1004_c_8_40
Type: TC
Location: 37979 - 39163 (+)
Type: TC
Location: 37979 - 39163 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.