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Cluster: Rep_1004_CGC27

🧬 Cluster Details

Gene Type Contig ID Protein ID Start Stop Direction Protein Family
TC Rep_1004_c_17 Rep_1004_c_17_198 202136 203143 + 3.A.1.13.1
pfam Rep_1004_c_17 Rep_1004_c_17_199 203189 203740 + GSHPx
TC Rep_1004_c_17 Rep_1004_c_17_200 203746 204501 + 3.A.1.13.1
STP Rep_1004_c_17 Rep_1004_c_17_201 204899 206053 + Aminotran_1_2
CAZyme Rep_1004_c_17 Rep_1004_c_17_202 206040 207020 + GT2
pfam Rep_1004_c_17 Rep_1004_c_17_203 207017 209002 + Formyl_trans_N | Epimerase | Formyl_trans_C | GDP_Man_Dehyd
pfam Rep_1004_c_17 Rep_1004_c_17_204 208999 209904 + Polysacc_deac_1
CAZyme Rep_1004_c_17 Rep_1004_c_17_205 209901 211565 + GT83
TC Rep_1004_c_17 Rep_1004_c_17_206 211562 211906 + 2.A.7.22.1
Gene ID: Rep_1004_c_17_198
Type: TC
Location: 202136 - 203143 (+)
Gene ID: Rep_1004_c_17_199
Type: pfam
Location: 203189 - 203740 (+)
Gene ID: Rep_1004_c_17_200
Type: TC
Location: 203746 - 204501 (+)
Gene ID: Rep_1004_c_17_201
Type: STP
Location: 204899 - 206053 (+)
Gene ID: Rep_1004_c_17_202
Type: CAZyme
Location: 206040 - 207020 (+)
Gene ID: Rep_1004_c_17_203
Type: pfam
Location: 207017 - 209002 (+)
Gene ID: Rep_1004_c_17_204
Type: pfam
Location: 208999 - 209904 (+)
Gene ID: Rep_1004_c_17_205
Type: CAZyme
Location: 209901 - 211565 (+)
Gene ID: Rep_1004_c_17_206
Type: TC
Location: 211562 - 211906 (+)

Taxonomic Lineage

Gene Level Read Mapping

  • Diet (De Filippis et al., 2019)
  • Diet (Huang et al., 2024)
  • IBD (Lloyd-Price et al., 2019)

Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)

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No differentially abundant genes found in the 2019 study.

🧭 Explore Read Mapping of CGC

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