Cluster: Rep_1004_CGC26
🧬 Cluster Details
- Gene Count: 6
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| TC | Rep_1004_c_17 | Rep_1004_c_17_174 | 178732 | 179586 | - | 3.A.1.15.4 |
| TC | Rep_1004_c_17 | Rep_1004_c_17_175 | 179586 | 180446 | - | 3.A.1.15.4 |
| TC | Rep_1004_c_17 | Rep_1004_c_17_176 | 180446 | 181336 | - | 3.A.1.15.4 |
| TC | Rep_1004_c_17 | Rep_1004_c_17_177 | 181333 | 182277 | - | 3.A.1.15.4 |
| pfam | Rep_1004_c_17 | Rep_1004_c_17_178 | 182409 | 182708 | - | GhoS |
| CAZyme | Rep_1004_c_17 | Rep_1004_c_17_179 | 182818 | 183483 | + | GH23 |
Gene ID: Rep_1004_c_17_174
Type: TC
Location: 178732 - 179586 (-)
Type: TC
Location: 178732 - 179586 (-)
Gene ID: Rep_1004_c_17_175
Type: TC
Location: 179586 - 180446 (-)
Type: TC
Location: 179586 - 180446 (-)
Gene ID: Rep_1004_c_17_176
Type: TC
Location: 180446 - 181336 (-)
Type: TC
Location: 180446 - 181336 (-)
Gene ID: Rep_1004_c_17_177
Type: TC
Location: 181333 - 182277 (-)
Type: TC
Location: 181333 - 182277 (-)
Gene ID: Rep_1004_c_17_178
Type: pfam
Location: 182409 - 182708 (-)
Type: pfam
Location: 182409 - 182708 (-)
Gene ID: Rep_1004_c_17_179
Type: CAZyme
Location: 182818 - 183483 (+)
Type: CAZyme
Location: 182818 - 183483 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.