Cluster: Rep_1004_CGC25
🧬 Cluster Details
- Gene Count: 5
- CAZyme Count: 1
- Substrate:
- Genome ID: Rep_1004
- CGC Family ID: CGCFAM_08800
- Continent: NA
- Source Study: Leviatan et al., 2022 →
| Gene Type | Contig ID | Protein ID | Start | Stop | Direction | Protein Family |
|---|---|---|---|---|---|---|
| CAZyme | Rep_1004_c_17 | Rep_1004_c_17_133 | 134883 | 136325 | - | GH32 |
| TC | Rep_1004_c_17 | Rep_1004_c_17_134 | 136322 | 137581 | - | 2.A.1.5.4 |
| TC | Rep_1004_c_17 | Rep_1004_c_17_135 | 137751 | 139055 | - | 2.A.1.6.4 |
| pfam | Rep_1004_c_17 | Rep_1004_c_17_136 | 139272 | 140891 | - | PEPCK_ATP |
| TC | Rep_1004_c_17 | Rep_1004_c_17_137 | 141324 | 142667 | + | 2.A.24.2.3 |
Gene ID: Rep_1004_c_17_133
Type: CAZyme
Location: 134883 - 136325 (-)
Type: CAZyme
Location: 134883 - 136325 (-)
Gene ID: Rep_1004_c_17_134
Type: TC
Location: 136322 - 137581 (-)
Type: TC
Location: 136322 - 137581 (-)
Gene ID: Rep_1004_c_17_135
Type: TC
Location: 137751 - 139055 (-)
Type: TC
Location: 137751 - 139055 (-)
Gene ID: Rep_1004_c_17_136
Type: pfam
Location: 139272 - 140891 (-)
Type: pfam
Location: 139272 - 140891 (-)
Gene ID: Rep_1004_c_17_137
Type: TC
Location: 141324 - 142667 (+)
Type: TC
Location: 141324 - 142667 (+)
Taxonomic Lineage
Domain
Bacteria
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Serratia
Species
Serratia marcescens_K
Gene Level Read Mapping
Gene level read mapping in Diet Intervention Studies (De Filippis et al., 2019)
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No differentially abundant genes found in the 2019 study.